Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells (Smart-Seq2 scRNA-seq)

ABSTRACT: Single-cell RNA-seq (Smart-Seq2) to profile of cardiac progenitor cells

ORGANISM(S): Mus musculus

PROVIDER: GSE114279 | GEO | 2018/09/12

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells (Smart-Seq2 scRNA-seq)

Project description:In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells (Smart-Seq2 scRNA-seq)

| PRJNA471003 | ENA

High Resolution Mapping of Mouse Embryonic Genome Activation using SMART-seq2

Project description:Single-embryo SMART-seq2 of mouse 2-cell stage embryos. The embryos have been generated with in vitro fertilization (IVF) and are staged as hours post-IVF.

2026-06-24 | E-MTAB-15452 | biostudies-arrayexpress

Smart-seq2 single-cell RNA sequencing of mouse liver non-parenchymal cells

Project description:Smart-seq2 scRNA-seq of liver non-parenchymal cells from 3 high-fat diet and 3 control mice.

2023-04-29 | GSE230440 | GEO

In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells

Project description:This SuperSeries is composed of the SubSeries listed below.

2018-09-12 | GSE114280 | GEO

Single cell RNA-seq of mouse brain microvascular fragments with Smart-seq2 method

Project description:In this single cell RNAseq analysis, we analyzed brain microvascular fragments from adult mice with the Smart-seq2 platform.

2026-07-22 | GSE313643 | GEO

Single cell RNA-seq of mouse brain vascular cells with Smart-seq2 method

Project description:In this single cell RNAseq analysis, we analyzed brain vascular cells from adult mice with the Smart-seq2 platform.

2026-07-22 | GSE311449 | GEO

Smart-seq2 single-cell RNA sequencing of human pancreatic islets

Project description:Previous study (Segerstolpe Å et.al., Cell Metab . 2016) has revealed the single-cell landscape of human pancreatic islets from 10 human individuals. Here, we have performed Smart-seq2 scRNA-seq of additional 4 healthy and 6 T2D individuals.

2025-08-22 | GSE214517 | GEO

SMART-seq2 of Kdm5b Overexpression in Fully Grown Oocytes

Project description:RNA-seq of single Fully Grown Oocytes using SMART-seq2. The oocytes were collected from female FVB mice, approximately. 44-48 h post-PMSG injection. The oocytes were microinjected with 1.3-1.7 μg/μL Kdm5b wild-type (WT) or catalytic mutant (CM) mRNA. Noninjected oocytes are denoted as “Noninj”. The oocytes were cultured overnight for approximately 16 h in M2 containing 20 μM Milrinone and 5% FBS and collected for sequencing.

2026-06-24 | E-MTAB-15453 | biostudies-arrayexpress

Single-cell RNAseq (SMART-seq2) of wild-type (TLAB) and MZoep (tz57) zebrafish embryos at 50% epiboly stage

Project description:SMART-seq2 was performed on single cells isolated from visually staged zebrafish embryos.

2018-04-27 | GSE106466 | GEO

Smart-seq2 analysis of P17 FACS sorted retinal cells from the Kcng4-cre;stop-YFP X Thy1-stop-YFP Line#1 mice

Project description:Four Kcng4-cre;stop-YFP mouse retinas from two mice were dissected, dissociated and FACS sorted, and single cell RNA-seq libraries were generated for 384 single cells using Smart-seq2. Aligned bam files are generated for 383 samples as one failed to align. Four mouse retinas (labeled 1la, 1Ra, and 2la, 2Ra respective from the two mice) were used, and 96 single cells from each were processed using Smart-seq2. Total 384 cells Smart-seq2 analysis of P17 FACS sorted retinal cells from the Kcng4-cre;stop-YFP mice (Kcng4tm1.1(cre)Jrs mice [Duan et al., Cell 158, 793-807, 2015] crossed to the cre-dependent reporter Thy1-stop-YFP Line#1 [Buffelli et al., Nature 424, 430-434, 2003])

2016-08-25 | E-GEOD-81903 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data