Signal sequences in the viral genome regulate the generation of copy-back defective viral genomes

ABSTRACT: We developed VODKA (Viral Opensource DVG Key Algorithm) to identify cbDVGs from RNA-Seq data from infected samples and used these DVG sequences to identify signals that regulate cbDVG generation. We applied VODKA to datasets from RSV-positive patients. VODKA identified common cbDVGs across multiple samples in both patients, and predicted specific genomic loci that mediate cbDVG formation.

ORGANISM(S): Homo sapiens

PROVIDER: GSE114948 | GEO | 2019/03/19

REPOSITORIES: GEO