Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome wide SMC1-mediated chromatin looping changes in shBORIS and shLUC resistant Kelly cells.

ABSTRACT: We performed SMC1-mediated ChIA-PET analysis in both shBORIS and shLUC resistant Kelly cells.

ORGANISM(S): Homo sapiens

PROVIDER: GSE115252 | GEO | 2019/08/07

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Genome wide SMC1-mediated chromatin looping changes in TAE sensitive and resistant Kelly cells

Project description:We performed SMC1-mediated ChIA-PET analysis in both TAE sensitive and resistant Kelly cells.

2019-08-07 | GSE103148 | GEO

Genome wide SMC1-mediated chromatin looping changes in shBORIS and shLUC resistant Kelly cells.

Project description:Genome wide SMC1-mediated chromatin looping changes in shBORIS and shLUC resistant Kelly cells.

| PRJNA474376 | ENA

Global gene expression analysis in shBORIS and shLUC resistant Kelly cells.

Project description:We performed gene expression profiling by Affymetrix primeview array in both shBORIS and shLUC resistant Kelly cells.

2019-08-07 | GSE115253 | GEO

Genome wide chromatin changes in shBORIS and shLUC resistant Kelly cells.

Project description:We performed ChIPseq on histone modification marks, transcriptional factors and chromatin architectural proteins in both shBORIS and shLUC resistant Kelly cells.

2019-08-07 | GSE115248 | GEO

Genome wide chromatin changes in shBORIS and shLUC resistant Kelly cells.

Project description:Genome wide chromatin changes in shBORIS and shLUC resistant Kelly cells.

| PRJNA474336 | ENA

Global gene expression analysis in shBORIS and shLUC resistant Kelly cells.

Project description:Global gene expression analysis in shBORIS and shLUC resistant Kelly cells.

| PRJNA474377 | ENA

Genome wide SMC1A-mediated chromatin looping changes (HiChIP) in TAE684-sensitive, resistant, resistant shBORIS and resistant shGFP Kelly cells.

Project description:We performed SMC1A-mediated HiChIP analysis in sensitive, resistant, resistant shBORIS and resistant shGFP Kelly cells.

2019-08-07 | GSE126792 | GEO

Long-range chromatin interactions in mouse embryonic stem cells identified by ChIA-PET [ChIA-PET]

Project description:The pluripotent state of embryonic stem cells (ESCs) is produced by active transcription of cell identity genes and repression of genes encoding lineage-specifying developmental regulators. Here we use large ESC cohesin ChIA-PET datasets and other genomic data to identify the local chromosomal structures at both active and repressed genes across the genome. The results show that super-enhancer driven cell identity genes generally occur within large loops that are connected through CTCF-CTCF interaction sites occupied by cohesin. Smc1 ChIA-PET data from wild type murine embryonic stem cells V6.5 were generated by deep sequencing using Illumina Hi-Seq 2000.

2014-06-27 | E-GEOD-57911 | biostudies-arrayexpress

An Estrogen Receptor α-bound Human Chromatin Interactome

Project description:We developed Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) for de novo detection of global chromatin interactions, and comprehensively mapped the chromatin interaction network bound by estrogen receptor α (ERα) in the human genome. We performed 454 and Illumina sequencing analyses. Keywords: Epigenetics Using 454, we examined 3 libraries: IHM001 (Estrogen Receptor ChIA-PET), IHM043 (Estrogen Receptor ChIP-PET) and IHM062 (IgG ChIA-PET) Using Illumina, we examined 4 libraries: IHM001 (Estrogen Receptor ChIA-PET replicate 1, Paired End Sequencing), IHH015 (Estrogen Receptor ChIA-PET replicate 2, Paired End Sequencing), H3K4me3 ChIP-Seq and RNA polymerase II ChIP-Seq

2009-09-11 | E-GEOD-18046 | biostudies-arrayexpress

Single-cell transcriptomic profiling of TAE684-sensitive, intermediate resistant and fully resistant Kelly cells.

Project description:We performed single-cell RNA-seq analysis in TAE684-sensitive, intermediate resistant and fully resistant Kelly cells.

2019-08-07 | GSE115251 | GEO