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Characterisation of three mouse cell lines by ATAC-seq (MV+, RAG and β-TC3 cells).

ABSTRACT: Chromatin accessibility profiling using ATAC-seq to study and identify novel Cis-regulatory elements of MV+ a lens epithelium cell line, RAG a mouse kidney adenocarcinoma cell line and β-TC3 cell a mouse pancreatic β cell, derived from mouse insulinoma.

ORGANISM(S): Mus musculus

PROVIDER: GSE119656 | GEO | 2018/10/18

REPOSITORIES: GEO

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Characterisation by Next generation Capture-C of Pax6 locus in three mouse cell lines (MV+, RAG and β-TC3 cells).

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Characterisation of three mouse cell lines by ATAC-seq (MV+, RAG and β-TC3 cells).

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2018-10-18 | GSE119658 | GEO

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RNA-seq profiling of mouse transformed culture cells as Pax6 locus cell models

Project description:Transcriptome profiling using RNA-seq of MV+, a mouse lens epithelium cell line expressing Pax6 and RAG renal adenocarcinoma cell line which does not express Pax6.

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ChIP-Chip tiling array for H3k27ac in mouse MV+ (lens epithelium) and RAG cells ( renal adenocarcinoma) over panel of genes including Pax6, Sox2, Otx2, Sox9.

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Project description:ChIP-Chip tiling array for CTCF and Rad21 in mouse β-TC3 cells (pancreatic insulinoma) MV+ (lens epithelium) and RAG cells (renal adenocarcinoma) over panel of genes including Pax6, Sox2, Otx2, Sox9.

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Project description:Transcriptome profiling using RNA-seq of β-TC3 cell, a mouse pancreatic cell line used in the study of novel Cis-regulatory elements for the Pax6 gene .

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