Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome wide RNA-seq of wild-type and Safa-/- BMDMs upon HSV-1 infection.

ABSTRACT: SAFA deficiency affects various gene expression upon HSV-1 infection.

ORGANISM(S): Mus musculus

PROVIDER: GSE120833 | GEO | 2018/10/05

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Genome wide RNA-seq of wild-type Hela transfected with SAFA-ADAR1cd upon HSV-1 infection

Project description:Genome wide RNA-Seq screen was did to detect gene expression of HSV-1 and Hela . We constructed a HeLa cell line that stably expresses the plasmids of SAFA or SAFA-ADAR1 catalytic domain(SAFA-ADAR1cd) or SAFA-ADAR1 catalytic domain E488Q(SAFA-ADAR1cd E488Q) . The RNAs were harvested followed by RNA sequencing to identify the edited RNA.

2022-06-01 | GSE132165 | GEO

RNA Immunoprecipitation and high-throughput sequencing of wild-type HEK293 cells upon HSV-1 infection.

Project description:SAFA showed stronger binding with HSV-1 RNA than with human RNA

2022-06-29 | GSE134714 | GEO

Genome wide RNA-seq of wild-type and Safa-/- BMDMs upon HSV-1 infection.

Project description:Genome wide RNA-seq of wild-type and Safa-/- BMDMs upon HSV-1 infection.

| PRJNA494671 | ENA

Genome wide RNA-seq of wild-type Hela transfected with SAFA-ADAR1cd upon HSV-1 infection

Project description:Genome wide RNA-seq of wild-type Hela transfected with SAFA-ADAR1cd upon HSV-1 infection

| PRJNA546234 | ENA

RNP- seq in wild-type and SAFA knockout or mutated cells

Project description:wild-type and safa-/- THP-1 cells, or Flag-SAFA and Flag-Del-RGG stable expressed SAFA-/- cells were infected with VSV for 24 hours, samples were collected and send for RNA-seq.

2022-03-31 | GSE199674 | GEO

Genome wide RNA-seq of wild-type iBMDMs upon HSV-1 infection.

Project description:Genome wide RNA-Seq screen was did to detect gene expression. We used immortalized bone-marrow-derived macrophages cells that were uninfected or infected with HSV-1 for 6 hours to detect the expression levels of genes, and we found that interferon stimulated genes were increased and some of genes that inhibit interferon production were decreased in HSV-1 infected iBMDMs, compared to wild-type iBMDMs. we choose some genes that are unknown about their functions on antiviral innate immunity, and adress how they participate in antiviral innate immunity.

2018-10-11 | GSE121061 | GEO

H3K27Ac ChIP-seq in wild-type and SAFA-/- cells

Project description:wild-type or SAFA-/- THP-1 cells were infected with VSV for 8 hours or 24 hours, ChIP-seq was did with H3K27Ac antibody.

2022-03-31 | GSE199402 | GEO

wild-type and SAFA-/- cells

Project description:wild-type and SAFA-/- cells

| PRJNA821168 | ENA

Cellular transcriptome upon HSV-1 infection or DUX4 overexpression

Project description:We found that the germline transcription factor double homeobox 4 (DUX4) is upregulated upon infection with wild-type herpes simplex virus-1 (HSV-1). The goal of this experiment was to compare the cellular transcriptome of HEK293T cells that were infected with HSV-1 (KOS strain), or transfected with a plasmid encoding human DUX4.

2018-09-19 | GSE101435 | GEO

RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

Project description:THP-1 cells were infected with VSV for 6 hours or 24 hours, RiP-seq was did with SAFA antibody.

2022-03-31 | GSE199677 | GEO