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Listeria monocytogenes EGD and EGD-e

ABSTRACT: Transcriptional profile after growth in MM (minimal medium (Premaratne et al. 2001) supplemented with 50 mM Glucose. Note: strain "EGD" has not been deposited at ATCC/NCTC. It is a derivative of the original Murray strain (Murray et al. 1926), obtained from S.H.E. Kaufmann. Strain "EGD-e" has been obtained from H. Hahn (Berlin) via T. Chakraborty (Gießen) and is deposited under ATTC BAA-679 and in the Pasteur culture collection. Keywords: strain comparison

ORGANISM(S): Listeria monocytogenes Listeria monocytogenes EGD-e

PROVIDER: GSE12146 | GEO | 2008/12/01

SECONDARY ACCESSION(S): PRJNA114665

REPOSITORIES: GEO

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Listeria monocytogenes EGD and EGD-e

Project description:Transcriptional profile after growth in MM (minimal medium (Premaratne et al. 2001) supplemented with 50 mM Glucose. Note: strain "EGD" has not been deposited at ATCC/NCTC. It is a derivative of the original Murray strain (Murray et al. 1926), obtained from S.H.E. Kaufmann. Strain "EGD-e" has been obtained from H. Hahn (Berlin) via T. Chakraborty (Gießen) and is deposited under ATTC BAA-679 and in the Pasteur culture collection. Keywords: strain comparison A total of three independently isolated RNA samples from each strain were used for the analysis.

2008-11-30 | E-GEOD-12146 | biostudies-arrayexpress

Transcription profiling of Listeria monocytogenes EGD-e versus the over-expressing strain (EGD-e+pPXrnhB

Project description:Bacteria were grown in BHI until OD600 1.0 (late exponential phase) and RNA stabilized using the RNAprotectTM bacteria reagent (QIAGEN) according to the manufacturer recommendations. For each strain, RNA extraction has been carried out on three independent biological samples. Briefly, bacterial total RNA was isolated, reverse transcribed, hybridised to whole genome microarray and microarray data was analysed as described previously (Chatterjee, 2006). Hybridizations were performed with cDNAs from EGD-e versus the over-expressing strain (EGD-e+pPXrnhB).

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Transcriptional adaptation of L. monocytogenes EGD to oxygen availability

Project description:Comparison of aerobic and anaerobic transcriptome of L. monocytogenes EGD L. monocytogenes EGD cells used in this study were grown either aerobically or anaerobically to an OD600 = 0.70 - 0.75 and the transcriptome of these two conditions was compared

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Transcription profiling of Listeria monocytogenes EGD wild type, Listeria monocytogenes EGD-e wild-type and EGD-e PrfA*, all grown in BHI at 37C

Project description:Comparison of Listeria monocytogenes transcripts in different strains (EGD wild-type versus EGD-e wild-type, EGD-e PrfA* versus EGD-e wild-type).

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Transcription profiling of Listeria monocytogenes EGD wild type, Listeria monocytogenes EGD-e wild-type and EGD-e PrfA*, all grown in BHI at 37C

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Transcriptome (RNA-seq) of HepG2 cells non-infected (NI) or infected (Inf.) with the pathogen Listeria monocytogenes (strain EGD-e)

Project description:Comparisons of gene expression profiles of human hepatocytes (HepG2) infected or not by the bacterium Listeria monocytogenes (strain EGD-e) for 72 hours and analysed by RNA-seq

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Transcriptome (RNA-seq) of Huh7 cells non-infected (NI) or infected (Inf.) with the pathogen Listeria monocytogenes (strain EGD-e)

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Listeria monocytogenes EGD and EGD-e

Project description:Listeria monocytogenes EGD and EGD-e

| PRJNA114665 | ENA

Transcription profiling of wild type Listera monocytogenes EGD-e and an isogenic deltahlydeltaplcA mutant strain 1 hour or 4 hours post infection into human intestinal epithelial cells

Project description:We infected wild type L. monocytogenes EGD-e (1) and its isogenic deltahlydeltaplcA (2) (lacking the ability to breach the vacuolar compartment of host cells following uptake) mutant strain to human intestinal epithelial cell line (Caco-2) with an MOI of 100 and 500 respectively. Bacterial total RNA was isolated at 1 h (deltahlydeltaplcA) and 4 h (EGD-e) post infection, reverse transcribed, hybridised to whole genome microarray and microarray data was analysed as described previously (3) 1. Glaser et al. 2001. Comparative genomics of Listeria species. Science 294:849-852. 2. Paschen et al. 2000. Human dendritic cells infected by Listeria monocytogenes: induction of maturation, requirements for phagolysosomal escape and antigen presentation capacity. Eur.J.Immunol. 30:3447-3456. 3. Chatterjee et al. 2006. Intracellular gene expression profile of Listeria monocytogenes. Infect.Immun. 74:1323-1338.

2008-06-18 | E-MEXP-1144 | biostudies-arrayexpress

Listeria monocytogenes EGD after growth BHI vs. LB vs. MM

Project description:Transcriptional profile of prfA, the dependent genes and the PTS genes after growth in BHI (brain-heart-infusion), LB (Luria Bertani broth) and MM (minimal medium (Premaratne et al. 2001) (each supplemented with 50 mM Glucose). Keywords: media comparison

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