Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

An integrated transcriptome analysis of immunological responses in pearl sac of pearl mussel Hyriopsis cumingii after mantle implantation

ABSTRACT: Our findings help us gain new insight into the immunological reactions induced by transplantation in pearl mussels and markedly bring us more clues about pearl sac formation, contributing to the novel development of management strategies for pearl culture.

ORGANISM(S): Sinohyriopsis cumingii

PROVIDER: GSE123069 | GEO | 2019/11/30

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

An integrated transcriptome analysis of immunological responses in pearl sac of pearl mussel Hyriopsis cumingii after mantle implantation

Project description:An integrated transcriptome analysis of immunological responses in pearl sac of pearl mussel Hyriopsis cumingii after mantle implantation

| PRJNA507438 | ENA

Pinctada imbricata strain:pearl sac

Project description:Pinctada imbricata strain:pearl sac Transcriptome or Gene expression

| PRJNA197321 | ENA

miRNA expression profile of mantle tissues for pearl oyster, Pinctada fucata

Project description:To elucidate the modulatory participation of miRNAs in mollusk biomineralization, we have employed high-throughput sequencing to identify miRNAs of pearl oyster, Pinctada fucata. Our study focused on the miRNA expression profile of the mantle, an organ responsible for shell formation of the oyster. The pearl oysters were cultured in the tank with the maintaining conditions of temperature 19 ℃, PH 8.1 and salinity 33‰ in recirculating seawater.

2021-05-01 | GSE145993 | GEO

Digital gene expression tag profile of five development stages of pearl sac from pearl oyster Pinctada martensii reveals potential candidates contributing to nacre formation

Project description:A sequencing depth of 5 million raw tags per sample was obtained and a large number of differentially expressed genes were identified. The results of the DGE tag profile were validated by examining gene expression in a subset of genes using qRT-PCR. Gene expression profiles at different pearl sac development stages implicated that a great change in the body of the host pearl oyster was induced by the surgical implantation and achieved the maximum at 15 days. An enrichment of genes relevant to purine metabolism was obtained by KEGG pathway analysis of the genes differentially expressed between 15 and 60 days. Analyzing gene expression trends, most of the immune-related genes, such as HSP70, TLR1 and lectin, were highly expressed before 30 days. While nacre formation-related genes, such as DPT and perlucin-like protein isoformA, and some immune-related genes, such as galectin and HSP90 like protein, were highly expressed at 60 days, indicating some immune-related gene may participate in nacre formation. Furthermore, we found 286 unigenes highly expressed at 60 days. These unigenes may be potential candidates contributing to nacre formation, such as leucine-rich repeat-containing protein, secreted protein with cysteine rich repeats and Cathepsin O.

2016-05-01 | GSE46265 | GEO

The mantle exosome and microRNAs of Hyriopsis cumingii involved in nacre color formation

Project description:The nacre color of shells has an effect on the pearl color in Hyriopsis cumingii, and is an important indicator for its value. However, little exosome and micro (mi)RNA information are available on nacre color formation in mussels. In this study, exosomes of mantles were extracted from white and purple mussels. High-throughput Illumina sequencing was performed on the white and purple mussel mantle exosomes.Moreover, miR-223 negatively regulated hcApo, which plays important roles in the absorption and transport of β-carotene in H. cumingii. These results improve our understanding of the molecular mechanisms of nacre color formation in H. cumingii.

2020-03-29 | GSE128650 | GEO

Pearl millet seedlings infected with rust, or treated with MeJA or SA

Project description:This SuperSeries is composed of the following subset Series: GSE13478: Pearl millet seedlings treated with methyl jasmonate (MeJA) GSE13479: Pearl millet seedlings infected with rust (Puccinia substriata) GSE13480: Pearl millet seedlings treated with salicylic acid (SA) Refer to individual Series

2010-05-14 | E-GEOD-13481 | biostudies-arrayexpress

Global gene expression profile for pearl oyster

Project description:This SuperSeries is composed of the following subset Series: GSE13980: Analysis of the global gene expression profile for pearl oyster, Pinctada maxima, exposed to organotin (tributyltin) GSE14303: Differential expression analysis of genes from the mantle tissue of pearl oyster: Pinctada maxima GSE14305: The microstructural, mineralogical and transcriptional developments of shell biomineralization of Pinctada maxima Refer to individual Series

2010-02-04 | E-GEOD-14306 | biostudies-arrayexpress

Modeling Post-Implantation Human Development to Yolk Sac Blood Emergence

Project description:Implantation of the human embryo commences a critical developmental stage that comprises profound events including axis formation, gastrulation, and the emergence of yolk sac hematopoietic system. Our mechanistic knowledge of this window of human life remains limited due to restricted access to in vivo samples for both technical and ethical reasons. Stem cell models of human embryo have emerged to help unlock the mysteries of this stage. Here, we present a model of early post-implantation human embryogenesis (embryoid) with an extra-embryonic endoderm and mesoderm niche to support early hematopoiesis. This human embryo model is genetically inducible, and its unanticipated self-organization results in the development of the amniotic cavity, formation of bilaminar disc embryonic morphology, an anterior hypoblast pole and posterior domain. The extra-embryonic layer of iDiscoid presents multilineage yolk sac tissue morphogenesis with extra-embryonic mesoderm and lacks trophoblast. Its development captures distinct waves of yolk sac hematopoiesis including the emergence of erythroid, myeloid and lymphoid cells . iDiscoid offers an easy-to-use, high-throughput, reproducible, and scalable platform to probe multifaceted aspects of human development and blood formation at early post-implantation stage. It will provide a tractable human-based model for drug testing, disease modeling, and a unique cell source for regenerative medicine.

2023-11-10 | GSE247111 | GEO

Pearl millet seedlings infected with rust (Puccinia substriata)

Project description:Transcriptional profiling of rust-infected pearl millet seedlings over time [0h, 20h, 5d and 8d post infection (pi)]. Keywords: Time course, Stress response

2009-01-01 | GSE13479 | GEO

Pearl millet seedlings treated with salicylic acid (SA)

Project description:Transcriptional profiling of SA-treated pearl millet seedlings over time [0, 12, 24 and 48 hours post treatment (hpt)]. Keywords: Time course, Stress response

2009-01-01 | GSE13480 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data