Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MicV, VrrA sRNA target identification

ABSTRACT: In this study we determined the target spectra of the MicV and VrrA sRNAs via pulse-expression followed by RNA-sequencing.

ORGANISM(S): Vibrio cholerae C6706

PROVIDER: GSE125160 | GEO | 2019/01/22

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

VadR sRNA target identification

Project description:In this study, we determined the target spectrum of the VadR sRNA via pulse-expression followed by RNA-sequencing.

2020-03-10 | GSE145764 | GEO

VqmR sRNA target identification

Project description:In this study, we determined the target spectrum of the VqmR sRNA via vqmR pulse-expression followed by RNA-sequencing.

2018-06-25 | GSE115715 | GEO

FarS target identification

Project description:In this study we determined the target spectrum of Vibrio cholerae FarS sRNA via pulse-expression followed by RNA-sequencing.

2020-02-03 | GSE140515 | GEO

OppZ target identification

Project description:In this study we determined the target spectrum of the Vibrio cholerae OppZ sRNA via pulse-expression followed by RNA-sequencing.

2020-05-07 | GSE144479 | GEO

Target identification for R0199

Project description:In this study we determined the target spectrum of C. crescentus sRNA R0199 via pulse-expression followed by RNA-sequencing.

2022-12-31 | GSE148208 | GEO

VcdRP target identification

Project description:In this study we determined the target spectrum of the Vibrio cholerae dual RNA regulator VcdRP via pulse-expression of different variants followed by RNA-sequencing.

2021-06-30 | GSE168736 | GEO

VqmR sRNA target identification

Project description:VqmR sRNA target identification

| PRJNA475803 | ENA

VadR sRNA target identification

Project description:VadR sRNA target identification

| PRJNA608178 | ENA

Identification of target genes differentially expressed after pulse expression of Neisseria gonorrhoeae sRNAs

Project description:Identification of target genes differentially expressed after pulse expression of Neisseria gonorrhoeae sRNAs

| PRJNA736869 | ENA

Affinity chromatography-based identification of sRNA protein partners in Rhizobia

Project description:This project aims to identify novel protein partners of conserved trans-sRNAs in the α-proteobacterium Sinorhizobium meliloti. Trans-sRNAs (AbcR2, NfeR1 and EcpR1) were tagged at their 5’ ends with the MS2 aptamer. To identify the proteins associated with the trans-sRNAs we: i) expressed and purified the MS2 coat protein fused to maltose-binding protein (MS2-MBP); ii) purified MS2 tagged sRNAs conjugated with MS2-MBP via amylase column; and iii) subjected retained proteins to mass spectrometry analysis. To discard unspecific interactions we also analysed several control samples: i) samples expressing untagged trans-sRNAs; ii) samples expressing an MS2 tagged Rho-independent transcriptional terminator.

2020-10-19 | PXD006410 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data