Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E. coli K-12 10 uM 5-fluorouracil biofilm vs. E. coli K-12 DMF biofilm

ABSTRACT: E. coli K-12 ATCC 25404 in LB medium with 5-fluorouracil 10 uM biofilm cells relative to E. coli K-12 ATCC 25404 in LB DMF biofilm cells. The same amount of stock 5-fluoroacil stock solution (0.1% of the volume) was added as DMF into the LB DMF.

ORGANISM(S): Escherichia coli

PROVIDER: GSE12750 | GEO | 2009/01/02

SECONDARY ACCESSION(S): PRJNA111001

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of E. coli K-12 biofilm, treated with 10 uM 5-fluorouracil vs. E. coli K-12 DMF treated biofilm

Project description:E. coli K-12 ATCC 25404 in LB medium with 5-fluorouracil 10 uM biofilm cells relative to E. coli K-12 ATCC 25404 in LB DMF biofilm cells. The same amount of stock 5-fluoroacil stock solution (0.1% of the volume) was added as DMF into the LB DMF. Experiment Overall Design: Strain: E. coli K-12 ATCC 25404 wild-type Experiment Overall Design: Medium: LB Experiment Overall Design: Biofilm growth on glass wool Experiment Overall Design: Time: 24 h Experiment Overall Design: Cell type: biofilm Experiment Overall Design: 5-fluorouracil vs. DMF

2009-01-09 | E-GEOD-12750 | biostudies-arrayexpress

E. coli K-12 mutant yjgI biofilm vs. wild type biofilm

Project description:The gene expression of glasswool biofilm cells in E. coli yjgI mutant vs. E. coli wild type strain in LB.

2011-05-29 | GSE22057 | GEO

E. coli K-12 mutant yjgI biofilm vs. wild type biofilm

Project description:The gene expression of glasswool biofilm cells in E. coli yjgI mutant vs. E. coli wild type strain in LB. Strains: E. coli K12 BW25113 wild type, yjgI mutant Medium: LB Biofilm grown on glass wool Time: 15 h Cell type: biofilm

2011-05-29 | E-GEOD-22057 | biostudies-arrayexpress

E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm

2008-03-19 | GSE6923 | GEO

E. coli K-12 mutant ycfR biofilm vs wild type 15 hr LB glu biofilm cells

2006-09-26 | GSE5904 | GEO

Transcription profiling of E. coli K-12 mutant ycfR biofilm vs wild type 15 hr LB glu biofilm cells

Project description:E. coli K-12 BW25113 mutant strain ycfR expression in biofilm cells relative to E. coli wild-type strain expression in biofilm cells. All samples cultured in LB glu with glass wool Experiment Overall Design: Strains: E. coli K-12 BW25113 wild type and mutant ycfR Experiment Overall Design: Medium: LB glu Experiment Overall Design: Biofilm grown on glass wool Experiment Overall Design: Time: 15 hr Experiment Overall Design: Cell type: biofilm

2008-06-14 | E-GEOD-5904 | biostudies-arrayexpress

Transcription profiling of E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm

Project description:E. coli K-12 wild type strains gene expression in biofilm cells with R1drd19 relative to that in biofilm cells of E. coli K-12 wild type strains without R1drd19. All the samples were cultured in LB or M9C glu on glass wool at different time. Experiment Overall Design: Strains: E. coli K-12 strains with and without R1drd19 respectively; Experiment Overall Design: Medium: LB was used for BW25113 strains, and M9C glu was used for MG1655 strains; Experiment Overall Design: Biofilm grown on glass wool; Experiment Overall Design: Time: 7h, 15h, 24h respectively; Experiment Overall Design: Cell type: biofilm.

2008-04-05 | E-GEOD-6923 | biostudies-arrayexpress

Temporal Biofilm Expression of E. coli K-12 after 4, 7, 15, and 24 hr

Project description:Temporal expression of biofilm and suspenion samples from E. coli wild type cultured on glass wool in LB medium. Samples removed after 4, 7, 15, and 24 hr of culturing Keywords: time course (temporal exression)

2006-10-23 | GSE3905 | GEO

Transcription profiling of E. coli K-12 yliH and yceP biofilm expression relative to wild type

Project description:Expression in biofilm cells of mutants yceP and yliH relative to biofilm cells of E. coli K-12 wild type strain Experiment Overall Design: All strain cultured in LB glu, biofilm isolated from glass wool after culturing for 24 hrs.

2008-06-12 | E-GEOD-3937 | biostudies-arrayexpress

Transcription profiling of E. coli K-12 MG1655 and E. coli K-12 LVM100 delta 5 TA mutant effect on biofilm cell development

Project description:The role of six toxin-antitoxin (TA) systems on biofilm development was investigated (MazEF, RelBEF, ChpB, YefM-YoeB, DinJ-YafQ, and TomB-Hha). Although these TA systems were reported previously to not impact bacterial fitness, we found that biofilm formation is decreased by toxins and increased by anti-toxins, in part, through YjgK. Hence, one role of TA systems is to regulate biofilm formation. Experiment Overall Design: Strains: E. coli K-12 MG1655 and E. coli K-12 LVM100 delta 5 TA mutant Experiment Overall Design: Medium: LB Experiment Overall Design: Cells: biofilm cells on glass wool Experiment Overall Design: Time: 15 h Experiment Overall Design: Temperature: 37oC

2009-02-09 | E-GEOD-11932 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data