Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Investigation of different gene expression of putative tt mutants under AIC condition using RNA-seq

ABSTRACT: Characterization of transparent testa mutants from large T-DNA collections

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE129589 | GEO | 2020/04/09

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Investigation on different small RNA expression of TT19 suppressors under anthocyanin induction condition (AIC) using Small RNA-seq

Project description:To investigate the functions of TRANSPARENT TESTA 19 (TT19) on anthocyanin accumulation and stabilization using forward genetic screening approach. EMS mutagenized tt19 mutant to screen tt19 mutant suppressors that could restore the anthocyanin accumulation and the causative mutations were identified as point mutations in the RDR6/SGS3/DCL4 siRNA biogenesis pathway using whole genome re-sequencing. The idea for RNA-Seq and small RNA-Seq analysis is to illustrate the connection between siRNA biogenesis, TT19, and anthocyanin restoration. RNA's of 4 Arabidopsis lines (col-0, tt19 and two TT19 suppressors, all in triplicate) which were under AIC (3% sucrose shaking four days under 24h light) for four days was extracted. Small RNA libraries were prepared by BGI company and sequenced using BGISEQ-500 as 50SE.

2020-04-20 | GSE136901 | GEO

Investigation of different gene expression of putative tt mutants under AIC condition using RNA-seq

Project description:Investigation of different gene expression of putative tt mutants under AIC condition using RNA-seq

| PRJNA531896 | ENA

Transcriptomic comparison of ST556 WT and rr11 mutants of Streptococcus pneumoniae ST556 under different condition

Project description:The opaque and transparent colonies frequency of rr11 mutants has been changed siginificantly compared with that of WT. The molecular mechanism of the regulation of RR11 on phase variation will help understand the penumococcal adaptation since RR11 belongs to a typical Two-component system. But the regulon of RR11 hasn't been identified until now. The RNA sequcing will help identify the regulons of RR11 in ST556.

2019-09-14 | GSE137447 | GEO

Systematic Discovery of Deeply Conserved Plant Protein Complexes, Arabidopsis seeds

Project description:The associated files are mass spec data from individual fractions of mixed-bed ion exchange chromatography of native extract made from Arabidopsis thaliana (mutant ttg1-1, Koornneef (1981) Arabid. Inf. Serv. 18,45-51.) seeds. This is a hypomorph of the Transparent Testa Glabra 1 gene and was used instead of wild type because it is mucilage-less, facilitating protein extract preparation.

2019-10-28 | PXD013264 | Pride