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HNSCC samples vs. normal tonsil samples: reference design

ABSTRACT: transcription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples using a two-color reference design experimental setting. Used to identify differentially expressed genes in tumor/normal samples, and compare the result to that of the same samples using the self-self hybridization experimental setting. Keywords: tumor/normal comparison

ORGANISM(S): Homo sapiens

PROVIDER: GSE13398 | GEO | 2009/01/22

SECONDARY ACCESSION(S): PRJNA114059

REPOSITORIES: GEO

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HNSCC samples vs. normal tonsil samples: self-self hybridization design

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Project description:transcription profiling of human head and neck squamous cell carcinoma (HNSCC) samples vs. normal tonsil samples using a two-color reference design experimental setting. Used to identify differentially expressed genes in tumor/normal samples, and compare the result to that of the same samples using the self-self hybridization experimental setting. Keywords: tumor/normal comparison 8 HNSCC tumor samples and 8 normal tonsil samples. One sample per array. Two-color reference design with a common reference sample (a modified version of the Stratagene Human Universal Reference) on each array.

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