MRNA profile of zebrafish periderm at 4-somite stage

ABSTRACT: In order to compare the transcriptome and tissue-specific nucleosome free regions of zebrafish periderm cells at 4-somite stage, we isolated the RNA from sorted GFP-positive cells of Tg(krt4:GFP) embryos and perform low-input RNA-seq. This study revealed periderm-specific transcriptome at 4-somite stage. Moreover, comparing with ATAC-seq from the same tissue, we confirmed the correlation between gene expression and nearby chromatin accessibility.

ORGANISM(S): Danio rerio

PROVIDER: GSE139808 | GEO | 2020/01/13

REPOSITORIES: GEO