Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degrees [N2 control]

ABSTRACT: We find gene expression oscillations which arise after a time lag of around 5 hours.

ORGANISM(S): Caenorhabditis elegans

PROVIDER: GSE141514 | GEO | 2020/07/27

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

mRNA sequencing time course of C. elegans samples at time point 0 hours until time point 15 hours at 25 degree.

Project description:We find gene expression oscillations which arise after a time lag of around 5 hours.

2020-07-27 | GSE130782 | GEO

mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degree [blmp-1(tm548) mutant]

Project description:We find gene expression oscillations which arise after a time lag of around 5 hours. Molecular oscillators can organize gene expression during development both temporally and spatially. In C. elegans, oscillations occur for ~25% of the transcriptome to control molting and potentially other developmental processes. The underlying mechanisms and organization of the oscillator remain unknown. We investigated the transcription factor BLMP-1, orthologous to mammalian PRDM1, as a rhythmically accumulating transcription factor that is required for robust rhythmic development, molting, and animal viability. We have sequenced synchronously growing populations of wild-type and blmp-1(tm548) mutant animals in a time course from 1 – 24 hours after plating with an hourly resolution.

2020-07-27 | GSE147388 | GEO

mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 16 hours at room temperature

Project description:We find gene expression oscillations which arise after a time lag of around 7 hours.

2020-09-01 | GSE133421 | GEO

mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degrees [N2 control]

Project description:mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degrees [N2 control]

| PRJNA593746 | ENA

mRNA-seq time course of C. elegans sampled from 5h until 48h at 25 degrees

Project description:We find 3739 'high-confidence oscillating' genes. These genes peak 4 times during larval development, but cease in adulthood

2020-07-27 | GSE130811 | GEO

mRNA sequencing time course of C. elegans samples at time point 0 hours until time point 15 hours at 25 degree.

Project description:mRNA sequencing time course of C. elegans samples at time point 0 hours until time point 15 hours at 25 degree.

| PRJNA541494 | ENA

mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degree [blmp-1(tm548) mutant]

Project description:mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 24 hours at 25 degree [blmp-1(tm548) mutant]

| PRJNA614468 | ENA

mRNA-seq time course of C. elegans sampled at and after release from dauer starvation at 25 degrees

Project description:We find that the 'high-confidence oscillating' genes initiate oscillations similarly as after release from L1 dauer. We performed high-throughput RNA sequencing on worms that were synchronously released from the dauer stage by refeeding on OP50. In particular, we investigate oscillatory gene expression as described in Hendriks et al., 2014 (doi: 10.1016/j.molcel.2013.12.013) and observe the re-initiation of oscillatory gene expression from stable expression with a time delay upon dauer exit. Experimental observation of the transitions between non-oscillatory and oscillatory states during the first 5 hours after dauer exit reveals that the oscillatory gene expression is arrested in a specific oscillator phase, similar to the observation we make in animals released from L1 arrest (see Meeuse et al., 2020, doi: https://doi.org/10.1101/755421).

2020-07-27 | GSE147894 | GEO

mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 16 hours at room temperature

Project description:mRNA sequencing time course of C. elegans samples at time point 1 hours until time point 16 hours at room temperature

| PRJNA551434 | ENA