Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its crc-deleted mutant (H78Δcrc)

ABSTRACT: Transcriptomic profiles of Pseudomonas protegens H78 and its crc-deleted mutant (H78Δcrc), which were grown to the late exponential phase (OD600 = 5.0 to 6.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on Illumina HiSeq 2500.

ORGANISM(S): Pseudomonas protegens

PROVIDER: GSE141557 | GEO | 2021/05/17

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its hfq mutant (H78Δhfq)

Project description:Transcriptomic profiles of Pseudomonas protegens H78 and its hfq mutant, which were grown to the late exponential phase (OD600 = 5.0 to 6.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on Illumina HiSeq 2500.

2021-05-17 | GSE141556 | GEO

Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its (p)ppGpp0 relA/spoT mutant

Project description:Transcriptomic profiles of Pseudomonas protegens H78 and its (p)ppGpp0 relA/spoT mutant, which were grown to the late exponential phase (OD600 = 5.0 to 6.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on Illumina 2500.

2017-02-27 | GSE89004 | GEO

Comparison of transcriptomic profiles of Pseudomonas protegens H78 and its rpoN-deleted mutant (H78ΔrpoN)

Project description:Transcriptomic profiles of Pseudomonas protegens H78 and its rpoN-deleted mutant (H78ΔrpoN), which were grown to the late exponential phase (OD600 = 4.0 to 5.0) in the KMB media at 28 °C, were assessed by deep sequencing (RNA-seq) on BGISEQ-500 (illumina).

2018-09-25 | GSE112907 | GEO

The rpoS transcriptome of Pseudomonas protegens Pf-5 grown in rich medium

2012-12-31 | GSE38632 | GEO

Transcriptomic consequence of the mutation in the response regulator gene gacA of the two-component regulatory system GacS/GacA in the rhizosphere biocontrol strain Pseudomonas aeruginosa M18

Project description:To investigate the influence of GacA on the genome-wide transcription of the rhizobacterium P. aeruginosa M18, DNA microarray experiments were carried out to compare the transcriptional profile of M18 with that of the gacA mutant grown to the early stationary phase (OD600 = 5.0 ~ 5.5) in KMB media. When compared with the M18 parental strain, the transcriptomic profile of gacA mutant revealed the significantly differential expression (increased or decreased by at least 2-fold as well as p-value < 0.05) of 839 genes, which represent approximately 15% of all 5696 annotated genes in the M18 genome. Of these 839 genes, 472 were downregulated and 367 genes were upregulated by the gacA mutation. P. aeruginosa M18 and its gacA mutant were grown to OD600=5.0-5.5 (early stationary phase) in KMB medium at 28M-bM-^DM-^C. Three independent experiments were performed at each time.

2013-06-07 | E-GEOD-43655 | biostudies-arrayexpress

The rpoS transcriptome of Pseudomonas protegens Pf-5 grown in rich medium

Project description:Transcriptomic profiling of an rpoS mutant of Pseudomonas protegens Pf-5 in comparison to the wild-type Pf-5 strain grown in nutrient broth supplemented with 1% glycerol to OD600=2.0-2.4 (early stationary phase). Two-condition experiment, the rpoS mutant compared to wild-type Pf-5 grown in nutrient broth supplemented with 1% glycerol to early stationary phase. There are three biological replicates and two flip-dye replicates for a total of six slides analyzed. Each slide contains three replicate spots per gene.

2012-12-31 | E-GEOD-38632 | biostudies-arrayexpress

Pseudomonas protegens strain:Crc-2

Project description:Pseudomonas protegens Crc-2 transcriptome - Crc-2_5

| PRJNA538135 | ENA

Pseudomonas protegens strain:Crc-2

Project description:Pseudomonas protegens Crc-2 transcriptome - Crc-2_6

| PRJNA538136 | ENA

Pseudomonas protegens strain:Crc-2

Project description:Pseudomonas protegens Crc-2 transcriptome - Crc-2_7

| PRJNA538137 | ENA

Pseudomonas protegens strain:Crc-2

Project description:Pseudomonas protegens Crc-2 transcriptome - Crc-2_8