Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The time-dependent global micro-transcriptome of Japanese flounder in response to Vibrio anguillarum infection

ABSTRACT: Japanese flounder (Paralichthys olivaceus) is an economic important aquaculture fish that was susceptible to Vibrio anguillarum. To fully deciphered the molecular mechanisms underlying flounder host defense against V. anguillarum infection, we perform the micro-transcriptome analysis of founder spleen with and without V. anguillarum infection at 3 time points.

ORGANISM(S): Paralichthys olivaceus

PROVIDER: GSE143478 | GEO | 2022/01/12

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Gene expression profiles in kidney of Japanese flounder injected with formalin-killed bacterial cells

Project description:In order to identify the genes induced by different bacterial cells, which may contain different types of pathogen associated molecular patterns (PAMPs), high-throughput gene expression analyses using Agilent custom-oligo DNA microarray containingon 9,573 probes constructed for Japanese flounder Paralichthys olivaceus were conducted. A number of genes showed significant changes in mRNA levels. However, there are no significant difference in a manner of the changes among the different bacterial cell treatments. The genes significantly induced by the treatments included well-known immune-related genes such as granulocyte-colony stimulation factor, haptoglobin, hepcidin. The kidney were isolated from the formalin killed cells (FKCs) intraperitoneal injected Japanese flounder, Paralichthys olivaceus using the four formalin-killed cells, Edwardsiella tarda strain 54, Lactococcus garviae strain EH8706, Streptococcus iniae strain 02 and Vibrio anguillarum strain H775-3, respectively. Fishes were administered by an intraperitoneal injection using the 1.0 x 10^7 to 1.0 x 10^8 cells of FKCs. After 6 hours from a injection, fish kidney was isolated. We also isolated phosphate-bufferd seline injected fish kidney as a control. We analyzed a four samples in control. We also analyze a three samples in FKC injected fish (16 hybridization).

2014-12-11 | E-GEOD-29219 | biostudies-arrayexpress

Gene expression profiles of vaccinated fish using a long-term efficiency mixed vaccine against Edwardsiella tarda performed by a new designed oligo DNA microarray in Japanese flounder Paralichthys olivaceus

Project description:Gene expression profiles by microarray have contributed for a elucidation of an immune-response and a determination of efficiency in vaccination. Recent day, edwardsielosis have caused a fatal damage in the aquaculture of Japanese flounder, Paralichthys olivaceus. However the formalin killed-cell vaccines made from Edwardsiella tarda isolated same fish species were not efficient. Recent our study revealed the mixed FKC vaccine made from the two different type of E. tarda protected Japanese flounder against Edwardsiella tarda infection for long-term. In this study, we analyzed the immune-response of a vaccinated fish kidney using the mixed FKC vaccine against Edwardsiella tarda with an Agilent custom-oligo DNA microarray on 9,573 probes of Japanese flounder. Our study revealed that the mixed FKC vaccine confered a strong immune-response and keeped a efficient for long-term on Japanese flounder.

2014-12-31 | GSE26808 | GEO

Gene expression profiles in kidney of Japanese flounder injected with formalin-killed bacterial cells

2014-12-11 | GSE29219 | GEO

Paralichthys olivaceus breed:Japanese flounder

Project description:Paralichthys olivaceus breed:Japanese flounder Raw sequence reads

| PRJNA776544 | ENA

MicroRNA map of Paralichthys olivaceus spleen at 6h and 24h after Streptococcus iniae infection

Project description:In this study, we applied high-throughput sequencing technology to examine miRNAs in Japanese flounder (Paralichthys olivaceus) infected with Streptococcus iniae at different times.

2021-12-30 | GSE133946 | GEO

Screening the target genes of IRF10 in Japanese flounder, Paralichthys olivaceus

Project description:In previous study, we revealed that IRF10 is involved in the immune-reponse against bacteria and virus in Paralichthys olivaceus. However, the target genes of IRF10 is still unknown in teleosts. We searched the target genes of IRF10 by microarray in IRF10 over expressed HINAE cell

2015-03-01 | GSE26959 | GEO

Paralichthys olivaceus breed:Japanese flounder

Project description:Paralichthys olivaceus Heart Transcriptome

| PRJNA716172 | ENA

Transcriptome involved in T3 treated Japanese flounder (Paralichthys olivaceus)

Project description:Transcriptome involved in T3 treated Japanese flounder (Paralichthys olivaceus)

| PRJNA414127 | ENA

microRNA data involved in T3 treated Japanese flounder (Paralichthys olivaceus)

Project description:microRNA data involved in T3 treated Japanese flounder (Paralichthys olivaceus)

| PRJNA414126 | ENA

Transcriptome and microRNA data involved in Japanese flounder (Paralichthys olivaceus) albinism

Project description:Transcriptome and microRNA data involved in Japanese flounder (Paralichthys olivaceus) albinism