Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

OppZ target identification

ABSTRACT: In this study we determined the target spectrum of the Vibrio cholerae OppZ sRNA via pulse-expression followed by RNA-sequencing.

ORGANISM(S): Vibrio cholerae

PROVIDER: GSE144479 | GEO | 2020/05/07

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

FarS target identification

Project description:In this study we determined the target spectrum of Vibrio cholerae FarS sRNA via pulse-expression followed by RNA-sequencing.

2020-02-03 | GSE140515 | GEO

VcdRP target identification

Project description:In this study we determined the target spectrum of the Vibrio cholerae dual RNA regulator VcdRP via pulse-expression of different variants followed by RNA-sequencing.

2021-06-30 | GSE168736 | GEO

VadR sRNA target identification

Project description:In this study, we determined the target spectrum of the VadR sRNA via pulse-expression followed by RNA-sequencing.

2020-03-10 | GSE145764 | GEO

VqmR sRNA target identification

Project description:In this study, we determined the target spectrum of the VqmR sRNA via vqmR pulse-expression followed by RNA-sequencing.

2018-06-25 | GSE115715 | GEO

Target identification for R0199

Project description:In this study we determined the target spectrum of C. crescentus sRNA R0199 via pulse-expression followed by RNA-sequencing.

2022-12-31 | GSE148208 | GEO

MicV, VrrA sRNA target identification

Project description:In this study we determined the target spectra of the MicV and VrrA sRNAs via pulse-expression followed by RNA-sequencing.

2019-01-22 | GSE125160 | GEO

Hfq RIP-seq analysis

Project description:In this study we used RNA co-immunoprecipitation followed by RNA-sequencing (RIP-seq) to identify Hfq-binding RNAs in Vibrio cholerae.

2020-02-03 | GSE140514 | GEO

Expression analysis of Vibrio cholerae O395N1 delta-nqrA-F mutant

Project description:Investigation of whole genome gene expression level changes in a Vibrio cholerae O395N1 delta-nqrA-F mutant, compared to the wild-type strain. Total RNA recovered from wild-type cultures of VIbrio cholerae O395N1 and its nqrA-F mutant strain. Each chip measures the expression level of 3,835 genes from Vibrio cholerae O1 biovar eltor str. N16961 with twenty average probes/gene, with five-fold technical redundancy.

2014-04-01 | E-GEOD-56387 | biostudies-arrayexpress

Expression data from C. elegans

Project description:We exposed wild-type Vibrio cholerae E7496, multiple Vibrio cholerae virulence factor deleted genes with intact hemolysin A gene [CVD109] and without hemolysin A gene [CVD110] in E7946, and E.coli OP50 to wild-type C.elegans N2 for 18 hours. We used microarrays to detail the global gene expression and identified distinct classes of up-regulated and down-regulated genes during this process. C. elegans were exposed to Vibrio cholerae and E.coli then hybridization on Affymetrix microarray chips.

2011-12-02 | E-GEOD-34026 | biostudies-arrayexpress

Expression data from D. melanogaster whole guts or intestinal progenitor cells isolated from flies mock infected or infected with wild type Vibrio cholerae (C6706) or type VI secretion system deficient Vibrio cholerae (C6706ΔvasK)

Project description:We used RNA-seq to determine transcriptional profiles of whole guts or IPCs isolated from guts infected with wild type or type VI secretion system deficient Vibrio cholerae. We found significant differences between guts and progenitor cells infected wild type or type VI secretion system deficient Vibrio cholerae.

2019-08-21 | GSE136069 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data