Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Epigenomic and Topological Mechanisms Regulate Transcriptional Programs in Hepatocellular Carcinoma Cells

ABSTRACT: Please note: There are no data associated with this record because the submitter failed to complete the submission of the data to GEO despite numerous requests. If you are interested in accessing these data, please contact the submitter and the journal editor. Samples and data can be added to GEO records at any time.

ORGANISM(S): Homo sapiens

PROVIDER: GSE144893 | GEO | 2023/07/11

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Autoregulation of fixK2 gene expression in Bradyrhizobium japonicum

2010-06-11 | GSE21400 | GEO

Autoregulation of fixK2 gene expression in Bradyrhizobium japonicum

Project description:Expression data from B. japonicum bll2758::aphII strain (7414) grown micro-oxically. This study includes also the expression data of a fixK2 and a fixJ mutant grown in free-living micro-oxic condition (samples GSM313721 to GSM313734 in GEO record number GSE12491) and the wild type strain grown micro-oxically (samples GSM210246 to GSM210268 in GEO record number GSE8478). B. japonicum bll2758::aphII strain (7414) transcriptome was determined. This study includes also the expression data of a fixK2 and a fixJ mutant grown in free-living micro-oxic condition (samples GSM313721 to GSM313734 in GEO record number GSE12491) and the wild type strain grown micro-oxically (samples GSM210246 to GSM210268 in GEO record number GSE8478).

2010-06-11 | E-GEOD-21400 | biostudies-arrayexpress

[E-MTAB-513] Illumina Human Body Map 2.0 Project

Project description:Illumina bodyMap2 transcriptome Transcription profiling by high throughput sequencing of individual and mixture of 16 human tissues RNA. Additional supplementary files available at foot of this record. Additional information available as supplementary files at the foot of this record. ArrayExpress Release Date: 2011-03-17 Person Roles: submitter Person Last Name: Khrebtukova Person First Name: Irina Person Mid Initials: Person Email: ikhrebtukova@illumina.com Person Phone: 1-510-723-9219 Person Address: 25861 Industrial Blvd, Hayward CA 94545, USA Person Affiliation: Illumina

2011-07-14 | GSE30611 | GEO

Effect of LAMR1-TP1. 092603MCM6

Project description:Infected neonatal mouse cardiomyocyte COMMENT: Submitter has not provided GEO with full dataset as described in Nat Genet. 2004 Feb;36(2):123-30. Keywords: parallel sample

2003-12-30 | GSE927 | GEO

RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription

Project description:Significant fractions of eukaryotic genomes give rise to RNA, much of which is unannotated and has reduced protein-coding potential. The genomic origins and the relations of human nuclear and cytosolic polyadenylated RNAs longer than 200 nucleotides and whole-cell RNAs less than 200 nt are investigated in this genome-wide study. Subcellular addresses for nucleotides present in detected RNAs were assigned, and their potential processing into short RNAs was investigated. Taken together, these observations suggest a role for some unannotated RNAs as primary transcripts for the production of short RNAs. Three novel potentially functional classes of RNAs have been identified, two of which are syntenically conserved and correlate with the expression state of protein-coding genes. These data support a highly interleaved organization of the human transcriptome. Processed data files: Graph files at ftp://ftp.ncbi.nih.gov/pub/geo/DATA/projects/GSE7576/graphs/ Transfrag files at ftp://ftp.ncbi.nih.gov/pub/geo/DATA/projects/GSE7576/transfrags/ CEL files available on each Sample record tpmap files available on each Platform record Keywords: tiling, RNA population complexity profiling

2007-05-25 | GSE7576 | GEO

The Physcomitrella Degradome

Project description:Deep sequencing of the 5' ends of uncapped, polyA-enriched mRNA from the moss Physcomitrella patens was performed (e.g. "degradome sequencing"). This GEO record contains all genome-matched and/or transcriptome-matched processed 24nt tags, representing the 5' ends of uncapped messages. These data were used to 1) discover microRNA targets and 2) to examine patterns of MIRNA hairpin cleavage.

2009-10-01 | GSE16367 | GEO

Transcription profiling of mouse neonatal mouse cardiomyocyte to investigate the effect of LAMR1-TP1 - INCOMPLETE DATASET

Project description:Infected neonatal mouse cardiomyocyte; COMMENT: Submitter has not provided GEO with full dataset as described in Nat Genet. 2004 Feb;36(2):123-30.

2008-06-16 | E-GEOD-927 | biostudies-arrayexpress

Expanding the regulon of the Bradyrhizobium diazoefficiens NnrR transcription factor: New insights into denitrification pathway

Project description:Genome-wide transcription profiling of B. diazoefficiens (formerly B. japonicum) wild type and nnrR mutant strain which were grown in free-living anoxic denitrifying conditions (using nitrate as final electron aceptor). This study includes also the expression data of the wild type strain grown oxically (samples GSM210269 to GSM210283 in GEO record number GSE8478). Keywords: CRP/FNR proteins, in vitro transcription, microoxia, nitrogen oxides, Rhizobia, transcriptomics

2019-08-22 | GSE130684 | GEO

Fine-tuning modulation of oxidation-mediated posttranslational control of Bradyrhizobium diazoefficiens FixK2 transcription factor

Project description:Genome-wide transcription profiling of B. diazoefficiens (formerly B. japonicum) wild type and a C183D FixK2 encoding strain which were cultured under microoxic conditions (0.5% O2). For comparison, this work also includes the expression data samples GSM210246 to GSM210268, and samples GSM313727 to GSM313734 in GEO record number GSE12491. Keywords: CRP/FNR proteins, in vitro transcription, microoxia, posttranslational control, protein-DNA interaction, Rhizobia, transcriptomics

2022-05-05 | GSE196031 | GEO

Immunological Genome Project data Phase 2

Project description:Gene-expression microarray datasets generated as part of the Immunological Genome Project (ImmGen) for samples that use a different set of amplification reagents (Ambion WT Expression Kit, not the Affymetrix GeneChip WT cDNA Synthesis and Amplification Kits). This Series record provides access to Immunological Genome Project data submitted to GEO.

2012-04-23 | E-GEOD-37448 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data