Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Diploid chromatin conformation capture (Dip-C) of single cells from the developing mouse cortex and hippocampus

ABSTRACT: To study the dynamics of 3D genome structure during postnatal development of the mouse forebrain, we performed Dip-C on 1,954 single cells from the mouse cortex and hippocampus at different ages throughout the first postnatal year.

ORGANISM(S): Mus musculus

PROVIDER: GSE146397 | GEO | 2021/01/07

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Diploid chromatin conformation capture (Dip-C) of single cells from the developing visual cortex of dark-reared and control mice

Project description:To study the effect of sensory experience on 3D genome structure of the mouse brain, we performed Dip-C on 1,692 single cells from the visual cortex of dark-reared and control mice at different ages throughout the first postnatal month.

2021-01-05 | GSE164203 | GEO

Single-cell chromatin conformation capture of diploid cells by Dip-C (analyzed with the dip-c package)

2018-08-15 | GSE117109 | GEO

Single-cell chromatin conformation capture of diploid cells by Dip-C (analyzed with the hickit package)

Project description:To reconstruct the 3D genomes of single diploid human and mouse cells, we performed single-cell chromatin conformation capture by a novel method, Dip-C, on human cells. This submission is similar to our submission GSE117109, but analyzed the data with the hickit package instead of the dip-c package. The raw data for the samples in this series are identical to the related samples in GSE117109. There are links between the original and re-analyzed data on the sample pages.

2018-08-15 | GSE117874 | GEO

Single-cell chromatin conformation capture of diploid cells by Dip-C

Project description:Single-cell chromatin conformation capture of diploid cells by Dip-C

| PRJNA483472 | ENA

Multiple annealing and looping based amplification cycles for digital transcriptomics (MALBAC-DT) of single cells from the developing mouse cortex and hippocampus

Project description:To study the dynamics of gene expression during postnatal development of the mouse forebrain, we performed MALBAC-DT on 3,517 single cells from the mouse cortex and hippocampus at different ages throughout the first 6 postnatal months.

2021-01-07 | GSE162509 | GEO

Single-cell chromatin conformation capture of mouse sensory neurons in visual and olfactory systems by Dip-C

Project description:We performed single-cell chromatin conformation capture with our recently developed method, Dip-C, on mouse sensory neurons in visual and olfactory systems, and reconstructed their 3D genomes.

2019-02-04 | GSE121791 | GEO

Single-cell chromatin conformation capture of diploid cells by Dip-C

Project description:This SuperSeries is composed of the SubSeries listed below.

2018-08-15 | GSE117876 | GEO

DIP-chip: Rapid and accurate determination of DNA-binding specificity

Project description:Validation of DNA ImmunoPrecipitation with microarray analysis (DIP-chip) technique using the Leu3 DNA binding domain. Keywords: DIP-chip, Leu3

2006-10-13 | GSE6016 | GEO

Gene expression profiling in Dip G-treated HL-60 cells

Project description:To understand the function of the small molecule Dip G, the gene expression profiles of HL-60 cells treated with Dip G were analyzed using the microarray.

2017-07-31 | GSE84652 | GEO

Investigation of Drosophila fruitless neurons that express Dpr/DIP cell adhesion molecules

Project description:Drosophila reproductive behaviors are directed by fruitless neurons. A reanalysis of genomic studies shows that genes encoding dpr and DIP Immunoglobulin superfamily (IgSF) members are expressed in fru P1 neurons. We find that each fru P1 and dpr/DIP (fru P1 ∩ dpr/DIP) overlapping expression pattern is similar in both sexes, but there are dimorphisms in neuronal morphology and cell number. Behavioral studies of fru P1 ∩ dpr/DIP perturbation genotypes indicates that the mushroom body functions together with the lateral protocerebral complex to direct courtship behavior. A single-cell RNA-seq analysis of fru P1 neurons shows that many DIPs have high expression in a small set of neurons, whereas the dprs are often expressed in a larger set of neurons at intermediate levels, with a myriad of dpr/DIP expression combinations. Functionally, we find that perturbations of sex hierarchy genes and of DIP-ε change the sex-specific morphologies of fru P1 ∩ DIP-α neurons.

2021-02-23 | GSE162098 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data