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Gene expression profiling shows that CYCLIN-DEPENDENT KINASE 8 (CDK8) promotes the expression of defense-related genes in a higher-order jaz (jazD) mutant

ABSTRACT: The decuple jaz mutation (jazD) promotes defense responses while inhibiting growth. We used RNA-sequencing to query the the transcriptomes of wild-type Col-0, cdk8-1, jazD and jazD cdk8-1 plants. The data highlight how CDK8 contributes to the expression of growth- and defense-related genes in jazD.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE147226 | GEO | 2023/03/19

REPOSITORIES: GEO

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Gene expression profiling shows that a jaz decuple mutation (jazD) promotes expression of defense-related genes while inhibiting expression of growth-related genes

Project description:The decuple jaz mutation (jazD) affects plant growth and defense. We used RNA-sequencing to query the transcriptomes of a jaz quintuple mutant (jazQ) and jazD, and examined how these mutations alter the expression of growth- and defense-associated genes in comparison to wild-type Col-0 plants. The data highlight how jasmonate pathways contribute to growth and defense.

2018-11-20 | GSE116681 | GEO

Gene expression profiling shows that combination of jazQ and phyB-9 mutations promotes additive and enhanced expression of growth- and defense-related genes

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2016-08-30 | GSE79012 | GEO

Gene expression profiling of the octuple jazQ mycT mutant shows that the MYC transcription factors control expression of many genes mis-regulated in jazQ, and also identifies some MYC-indepedent expression changes

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A single JAZ repressor controls the jasmonate pathway in Marchantia polymorpha

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2018-11-10 | GSE118149 | GEO

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2012-03-05 | E-GEOD-30817 | biostudies-arrayexpress

Transcription profiling by array of Drosophila melanogaster CDK8 and Cyclin C homozygous mutants, determined using Affymetrix GeneChip Drosophila Genome 2.0 Array

Project description:Gene expression profile in CDK8 and Cyclin C homozygous mutants (the third instar larvae) is determined using Affymetrix GeneChip Drosophila Genome 2.0 Array

2012-06-01 | E-MTAB-1066 | biostudies-arrayexpress

Gene expression analysis of mouse intestinal cells that lack Cdk8

Project description:RNAseq is performed (50bp single end reads) on parental young adult mouse intestinal cells (YAMC) or two clones in which Cdk8 allele is ablated using CRISPR Examination of transcriptomic changes after knockout of Cdk8 using CRISPR. Two clones of Cdk8 knockouts are compared to parental YAMC cells

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