Transcriptomics

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HEPACAM2 expression is specific to small cell cancers and regulates cell-matrix interactions


ABSTRACT: HEPACAM2 is a member of the immunoglobulin-like superfamily about which little is known. We initially discovered specific high expression of this gene in small cell lung cancer (SCLC) relative to non-small cell lung cancer (NSCLC), similar to several neuroendocrine genes. Further examination of RNA-seq data from the Cancer Cell Line Encyclopedia and the Cancer Genome Atlas revealed that HEPACAM2 was highly expressed only in SCLC relative to all other cancers. HEPACAM2 expression was greater in SCLC compared with matching normal tissue; and also compared with pulmonary carcinoids. Although endogenous HEPACAM2 could not be detected by western blotting SCLC cells, stable over-expression of FLAG-tagged HEPACAM2 in NSCLC cells allowed detection of a ~70 kDa protein that was reduced to ~50 kDa by tunicamycin treatment, indicating its modification by glycosylation. Biotin labelling experiments further demonstrated that HEPACAM2 was present on the cell surface. Interestingly, in vitro experiments showed that HEPACAM2 over-expressing cells demonstrated more rapid cell attachment and slower wound healing relative to parental controls. This result was supported by RNA-seq analyses that revealed significant changes in gene expression related to cell adhesion and migration pathways in HEPACAM2 over-expressing cells, however validation assays demonstrated increased, not decreased, MMP2 and MMP9 expression. Remarkably, stable CRISPR knockdown of endogenous HEPACAM2 had no significant effects by pathway analysis. Nevertheless, specific and high expression of HEPACAM2 in SCLC suggests that it plays a unique and important role in SCLC biology and whose cell surface location may provide an attractive therapeutic target for this cancer.

ORGANISM(S): Homo sapiens

PROVIDER: GSE149035 | GEO | 2021/04/01

REPOSITORIES: GEO

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