Estimating and predicting the resolution of HiC libraries

ABSTRACT: High resolution HiC libraries are usually lightly sequenced before investing in a deep sequencing. We modeled HiC resolution in function of the sequencing depth to predict accurately the resolution of any high resolution HiC library given a small sequnecing batch of the library. To test our tool, we used public datasets as well as a newly generated dataset using Arima kit on mouse purified rods photoreceptors.

ORGANISM(S): Mus musculus

PROVIDER: GSE152491 | GEO | 2021/11/30

REPOSITORIES: GEO