Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hypoxia-induced SETX links replication stress with the unfolded protein response

ABSTRACT: Study of Transcriptomic changes upon Senataxin depletion in Normoxia and Hypoxia

ORGANISM(S): Homo sapiens

PROVIDER: GSE157371 | GEO | 2021/04/26

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Hypoxia-induced SETX links replication stress with the unfolded protein response.

Project description: Not available

| S-EPMC8211819 | biostudies-literature

Hypoxia-induced SETX links replication stress with the unfolded protein response

Project description:Hypoxia-induced SETX links replication stress with the unfolded protein response

| PRJNA661072 | ENA

Gene expression profiling in Setx shRNA P19 cells, wild type human Setx P19 transfected cells with and without retionoic acid

2010-07-10 | GSE21724 | GEO

Gene expression profiling in Setx shRNA P19 cells, wild type human Setx P19 transfected cells with and without retionoic acid

Project description:Analysis of senataxin effect on neuronal differentiation and neurite growth in RA-treated P19 cells by modulating senataxin expression levels. Senataxin silencing does not grossly affect the gene expression profiles of P19 cells At day one total RNA from Setx shRNA P19 cells, wild type human Setx P19 transfected cells with and without retionoic acid were used to compare gene expression profiling versus P19 control cells

2010-07-10 | E-GEOD-21724 | biostudies-arrayexpress

Mycobacterium tuberculosis normoxia hypoxia reactivation with ActivX-desthiobiotin FP probe

Project description:Lysates of Mycobacterium tuberculosis (H37Rv auxotroph mc(2)6020) grown under various conditions (normoxia, hypoxia, reactivation from hypoxia) probed the serine hydrolase probe with ActivX-desthiobiotin FP.

2016-10-10 | MSV000080238 | MassIVE

Hypoxia and lymphatic endothelial cells

Project description:Lymphatic endothelial cells were grown under normoxia, hypoxia (1% 0xygen) and conditioned medio from NSLCN growth under normoxia or hypoxia. Gene expression was measured and comparition between samples performed Keywords: Comparative genomic hybridization

2007-08-23 | GSE5579 | GEO

Effect of Hypoxia, Oscillatory Hypoxia, and Lactate on MDA 231 Cells

Project description:MDA 231 cells were cultured under hypoxia, normoxia, oscillatory hypoxia, and lactate and sequenced for RNA

2024-03-14 | GSE261312 | GEO

Exosome proteomics under hypoxia

Project description:TMT multiplexed exosome samples, SEC purified from cells cultured under Normoxia and Hypoxia

2021-09-10 | PXD024044 | Pride

Hypoxia extends lifespan and neurological function in a mouse model of aging

Project description:To investigate the effect of chronic continuous hypoxia (11%) oxygen on lifespan and neurological function in Ercc1 ∆/- mice. We performed bulk RNA-seq of the cerebellum from mice that were Ercc1 ∆/- normoxia, Ercc1 ∆/- hypoxia, wildtype normoxia, wildtype hypoxia.

2023-04-10 | GSE219203 | GEO

Renal Cell Carcinoma (Renca) Extracellular Vesicles under Hypoxia and Normoxia

Project description:Extracellular vesicles (EVs) represent a diverse group of small membrane-encapsulated particles and provide a universal molecular cell-cell communication system. Hypoxia is a typical condition in solid tumors, and cancer-derived EVs support growth and invasion of tissues by tumor cells. EVs were purified from cell culture medium by ultracentrifugation followed by size exclusion chromatography with Exo-spin™ columns (Cell Guidance Systems Ltd). We performed proteomic analysis of five hypoxia/normoxia pairs of EV samples; each of these replicates for either hypoxia or normoxia was analyzed in duplicates. Obtained data were compared with proteomics analysis of corresponding cell culture media supernatants (SN) after EV removal with 100 000 g ultracentrifugation. We found that exposure of tumor cells to hypoxia (1% oxygen) induced EV secretion, altered EV sizes, and led to notable changes in the EV protein cargo in comparison to normoxia.

2022-02-16 | PXD023546 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data