Transcriptomics

Dataset Information

0

Selective mTORC1 inhibition prevents and treats NAFLD and NASH


ABSTRACT: We find that selective inhibition of one arm of mTORC1 signaling, via deletion of FLCN, promotes activation of the transcription factor TFE3 and profoundly protects against NAFLD and NASH in mice. (1) We performed genome-wide RNA-seq on livers from Control, liver-specific Flcn-null mice (LiFKO), and Flcn/Tfe3 double knock-out (DKO) mice fed either normal chow (NC) or a NAFLD-inducing diet (AMLN). We find TFE3-mediated induction of lysosomal and mitochondrial gene programs, and also suppression of de novo lipogenesis genes. (2) To understand whether TFE3 directly affects gene expression, we performed TFE3 ChIP-seq on livers from Control and LiFKO mice on normal chow. We find TFE3 occupancy on the chromatin at lysosomal genes, Ppargc1a (a driver of mitochondrial genes), and at de novo lipogenesis genes. (3) Finally, we wanted to test whether TFE3 antagonistically competes with the pro-lipogenic transcription factor SREBP-1c on chromatin. We therefore injected HA-tagged constitutively nuclear (active) SREBP-1c (nSREBP-1c), or a control virus, into control and LiFKO mice, treated them with a NAFLD-inducing diet (FPC diet), and collected liver tissue. We consequently performed HA-nSREBP-1c and TFE3 ChIP-seq experiments and observed no evidence of antagonistic competition.

ORGANISM(S): Mus musculus

PROVIDER: GSE160292 | GEO | 2022/04/15

REPOSITORIES: GEO

Similar Datasets

2020-08-07 | GSE135490 | GEO
2023-04-04 | PXD035450 | Pride
2010-10-11 | E-GEOD-23614 | biostudies-arrayexpress
2020-12-23 | GSE163791 | GEO
2013-04-10 | E-GEOD-39815 | biostudies-arrayexpress
2021-10-19 | GSE186024 | GEO
2010-10-11 | GSE23614 | GEO
2020-06-29 | GSE139901 | GEO
2023-03-30 | GSE213063 | GEO
2022-08-02 | PXD032211 | Pride