Transcriptomics

Dataset Information

35

Transcriptome analysis of rice (Oryza sativa cv.TW16) in relation to infection with rice tungro spherical virus (RTSV)


ABSTRACT: Rice tungro disease is caused by the interaction between Rice tungro spherical virus (RTSV) and Rice tungro bacilliform virus. Infection with RTSV alone does not result in any distinctive symptoms in TW16 that is one of RTSV resistant indica rice. To elucidate the basis of asymptomatic response of rice to RTSV at the gene expression level, global gene response in RTSV-infected TN1 was detected by custom microarray. Keywords: time course, virus infection, disease response Overall design: Comparison between RTSV and mock infected rice. Biological replicates: 3 control (mock), 3 RTSV-infected at each time point, independently grown and harvested at 6 to 15 days after inoculation (DAI). 1 samples prepared with whole plant 5 cm above ground and pooled from 5 plants grown under same conditons.

INSTRUMENT(S): Custom GER rice oligoarray

ORGANISM(S): Oryza sativa Indica Group  

SUBMITTER: Kouji Satoh 

PROVIDER: GSE16140 | GEO | 2009-12-07

SECONDARY ACCESSION(S): PRJNA122811

REPOSITORIES: GEO

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