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Characterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression

ABSTRACT: We performed mRNA-seq on mouse embryonic stem cells, with four DEAD-box family proteins, DDX10, DDX24, DDX27, DDX54 being partially depleted using RNA interference. Knockdown of EGFP was carried out as a control. By comparing all four knockdowns, we observed misregulation of a highly-overlapping set of genes, indicating that they regulate mRNA levels through a shared pathway.

ORGANISM(S): Mus musculus

PROVIDER: GSE161890 | GEO | 2021/08/25

REPOSITORIES: GEO

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i.e. RFX8 mediates DDX24 transcription in human hepatocellular carcinoma

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Characterization of R-loop-interacting proteins in embryonic stem cells reveals roles in ribosomal RNA processing and gene expression

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