Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ChIP-seq of wild type and ets-5-gfp worms

ABSTRACT: We performed ChIP-seq on worms expressing gfp-tagged ets-5 and wild type worms as a control.

ORGANISM(S): Caenorhabditis elegans

PROVIDER: GSE161984 | GEO | 2020/11/23

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

ChIP-seq of wild type and ets-5-gfp worms

Project description:ChIP-seq of wild type and ets-5-gfp worms

| PRJNA680269 | ENA

Identification of GFP-SPT-2 binding sites in the Caenorhabditis elegans genome

Project description:We aimed at investigating whether the newly identified C. elegans SPT2 histone chaperone controls chromatin structure. We decided to profile SPT-2 binding sites to identify its genomic targets and we performed GFP ChIP-seq on a C. elegans strain expressing endogenously GFP-tagged SPT-2, using WT N2 untagged worms as control for binding specificity.

2023-02-09 | GSE224800 | GEO

Differential gene expression analysis on cells expressing Wild type GFP-MAB21L1 and its mutant form GFP-Arg51Leu and GFP-Arg51Gln

Project description:RNA Sequencing analysis was performed on RNA isolated from cells tagged with GFP-MAB21L1 and its mutant form GFP-Arg51Leu and GFP-Arg51Gln with and without treatment of tetracycline for 12 hrs. Transcript-level quantitation was performed using Salmon (v0.8.2) against the GRCh38 Ensembl reference transcriptome (release-89).Transcript-level counts were summarized to gene level using the bioconductor package tximport (v1.4.0). Differential expression analysis was performed with the bioconductor package DESeq2 (v1.30.0) using the Wald significance tests.

2021-11-27 | GSE166078 | GEO

Quantitative Analysis of Wild Type worms and vit-5 RNAi worms Transcriptomes

Project description:Purpose: To identify the mechanism underlying reduced vitellogenin accumulation regulates the reproductive span, we used RNA-Seq analysis to study the transcriptional profiles Wild Type worms and vit-5 RNAi worms.

2021-08-20 | GSE182330 | GEO

Ferritin regulation upon ETS-4/SPDEF depletion promotes cold survival in C. elegans

Project description:In this study, we subjected wild type worms and worms deficient in ETS-4, ETS-4 and DAF16, ETS-4 and PQM-1, to cold treatment and analyzed their transcriptional profiles by RNAseq.

2019-05-29 | GSE131870 | GEO

Quantitative Analysis of Wild Type worms and vit-5 RNAi worms Transcriptomes

Project description:Quantitative Analysis of Wild Type worms and vit-5 RNAi worms Transcriptomes

| PRJNA755869 | ENA

Differential gene expression analysis on cells expressing Wild type GFP-MAB21L1 and its mutant form GFP-Arg51Leu and GFP-Arg51Gln

Project description:Differential gene expression analysis on cells expressing Wild type GFP-MAB21L1 and its mutant form GFP-Arg51Leu and GFP-Arg51Gln

| PRJNA699228 | ENA

Gene Expression Profiling of C. elegans - ets-4 Mutant Animals Vs Wild-type

Project description:The gene expression profile of WT (N2) C. elegans were compared to that of ets-4(ok165) and ets-4(uz1) mutant animals

2010-05-15 | GSE21851 | GEO

Protein interactions with GFP-tagged cytoplasmic dynein-2 DATASET1

Project description:To identify those proteins interacting with the cytoplasmic dynein-2 using mammalian cell lines stably expressing GFP-tagged intermediate chain subunits, WDR34 (DYNC2I2) or WDR60 (DYNC2I1).

2023-01-24 | PXD031157 | Pride

Protein interactions with GFP-tagged cytoplasmic dynein-2 DATASET3

2023-01-24 | PXD031156 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data