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RNA sequencing reveals that methionine supply during late-gestation alters neonatal Holstein heifer calf liver transcriptome profiles

ABSTRACT: Maternal methionine supply during late pregnancy can affect offspring growth and development via nutritional programming. In the present study, we investigated if increasing the supply of methionine during late-pregnancy in Holstein cows affects transcriptome profiles in the offspring.

ORGANISM(S): Bos taurus

PROVIDER: GSE163644 | GEO | 2021/01/24

REPOSITORIES: GEO

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Project description:The objective of this study was to analyze the mammary gland transcriptome to determine how preweaning nutrient supply alters the molecular mechanisms that regulate preweaning mammary development. Holstein heifers were fed via milk replacer either an elevated level of nutrient intake (ELE; on average, 5.9 ± 0.2 Mcal ME in 8.4 L of milk replacer (MR)/d, n = 6) or a restricted amount of nutrients (RES; 2.8 ± 0.2 Mcal ME in 4L MR/day, n = 5) for 54 d postnatal, at which point they were slaughtered and samples of mammary parenchyma tissue were obtained. Parenchymal mRNA was analyzed and the fold changes (FC) of 18,111 genes (ELE relative to RES) were uploaded to Ingenuity Pathway Analysis (IPA) software for transcriptomic analysis. Using a threshold of P < 0.05, IPA identified that the FC of 1,931 of 18,811 differentially expressed genes (DEG) could be utilized for the analysis. A total 18 molecular and cellular functions were relevant (P < 0.05) to DE genes arising from the treatments, with Cell Death and Survival, Cellular Movement, Cellular Development, Cellular Growth and Proliferation, and Lipid Metabolism being the 5 most associated functions with DEG. Based on the directional FC of DEG, the mammary gland of ELE heifers was predicted to have increased Epithelial-Mesenchymal Transition (Z = 2.685) and Accumulation of Lipid (Z = 2.322), while the Synthesis of DNA (Z = -2.137), Transactivation of RNA (Z = -2.254), Expression of RNA (Z = -2.405), Transcription (Z = -2.482) and Transactivation (Z = -2.611) were all predicted to be decreased. Additionally, IPA predicted the activation status of 13 upstream regulators with direct influence on DEG as affected by ELE feeding that were either ligand-dependent nuclear receptors (n = 2), enzyme (n = 1), or transcription regulators (n = 10). Of these, 6 were activated (Z > 2) and 7 were inhibited (Z < -2). In summary, feeding ELE preweaning altered the mammary transcriptome of Holstein heifers affecting cell functions involved in the morphological and physiological development of the mammary gland.

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RNA sequencing reveals that methionine supply during late-gestation alters neonatal Holstein heifer calf liver transcriptome profiles

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