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In vitro model of urothelial cell differentiation using bladder cancer cell lines with various degree of epithelial mesenchymal transition

ABSTRACT: Cancer cell lines frequently lose epithelial characters (epithelial mesenchymal transition or EMT) but some cell lines retain them without EMT. Here we performed microarray analysis of two different types of human bladder cancer cell lines to characterize urothelial differentiation from stem cells.

ORGANISM(S): Homo sapiens

PROVIDER: GSE164828 | GEO | 2021/01/15

REPOSITORIES: GEO

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Project description:Thiele2013 - Urinary bladder urothelial cells The model of urinary bladder urothelial cells metabolism is derived from the community-driven global reconstruction of human metabolism (version 2.02, MODEL1109130000 ). This model is described in the article: A community-driven global reconstruction of human metabolism. Thiele I, et al . Nature Biotechnology Abstract: Multiple models of human metabolism have been reconstructed, but each represents only a subset of our knowledge. Here we describe Recon 2, a community-driven, consensus 'metabolic reconstruction', which is the most comprehensive representation of human metabolism that is applicable to computational modeling. Compared with its predecessors, the reconstruction has improved topological and functional features, including ~2x more reactions and ~1.7x more unique metabolites. Using Recon 2 we predicted changes in metabolite biomarkers for 49 inborn errors of metabolism with 77% accuracy when compared to experimental data. Mapping metabolomic data and drug information onto Recon 2 demonstrates its potential for integrating and analyzing diverse data types. Using protein expression data, we automatically generated a compendium of 65 cell type-specific models, providing a basis for manual curation or investigation of cell-specific metabolic properties. Recon 2 will facilitate many future biomedical studies and is freely available at http://humanmetabolism.org/. This model is hosted on BioModels Database and identified by: MODEL1310110035 . To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models . To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

Dataset Information

In vitro model of urothelial cell differentiation using bladder cancer cell lines with various degree of epithelial mesenchymal transition

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