Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The function of OsCERK1 in the chitin elicitor signaling in Rice

ABSTRACT: To see the function of OsCERK1 receptor-like kinase in the chitin elicitor signaling in Rice, we compared the gene expression profiles in the chitin oligosaccharide treated cultured rice cells of vector control and OsCERK1 knock-down mutant (RNAi). Keywords: Defense response

ORGANISM(S): Oryza sativa

PROVIDER: GSE16800 | GEO | 2010/06/24

SECONDARY ACCESSION(S): PRJNA117511

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

The function of OsCERK1 in the chitin elicitor signaling in Rice

Project description:To see the function of OsCERK1 receptor-like kinase in the chitin elicitor signaling in Rice, we compared the gene expression profiles in the chitin oligosaccharide treated cultured rice cells of vector control and OsCERK1 knock-down mutant (RNAi). Keywords: Defense response 1,Chitin oligosaccharide treatment (vector control), 2,Chitin oligosaccharide treatment (vector control) color swap, 3,Chitin oligosaccharide treatment (OsCERK1 RNAi), 4,Chitin oligosaccharide treatment (OsCERK1 RNAi) color swap

2010-06-24 | E-GEOD-16800 | biostudies-arrayexpress

Chitin oligosaccharide elicitor-responsive genes in suspension cultured rice cells

Project description:Chitin is a major component of fungal cell walls and serves as a molecular pattern for the recognition of potential pathogens in the innate immune systems of both plants and animals. In plants, chitin oligosaccharides have been known to induce various defense responses in a wide range of plant cells including both monocots and dicots. We identified chitine oligosaccharide-responsive genes in suspension-cultured rice cells 6 and 24 h after treatment using rice 44k microarray. Expression profiling in rice cells treated with chitin oligosaccharide for 6 and 24 h was compared with that in untreated control using two-color method with four biological replicates.

2014-04-01 | E-GEOD-53414 | biostudies-arrayexpress

Chitin oligosaccharide elicitor-responsive genes in suspension cultured rice cells

2014-04-01 | GSE53414 | GEO

The function of CERK1 receptor-like kinase in the chitin elicitor signaling in Arabidopsis

Project description:To see the function of CERK1 receptor-like kinase in the chitin elicitor signaling in Arabidopsis, we compared the gene expression profiles in the chitin oligosaccharide treated seedlings of wild type A. thaliana and CERK1 knock-out mutant. Keywords: Defense response

2008-10-01 | GSE9346 | GEO

The function of CEBiP in the chitin elicitor signaling in rice cells

Project description:To see the function of CEBiP in the chitin elicitor signaling in rice cells, a plasmid for the gene-specific knock-down by RNA interference (RNAi) was constructed by using a sequence for the 3’-terminal region of CEBiP and transformed into the rice cells by using Rhizobium radiobacter (Agrobacterium tumefaciens). chitinoligomer was added (or not added) to the medium. For the control of them, rice cells that non transformed wild type was used. Keywords: genetic modification

2006-06-13 | GSE4645 | GEO

Chitin oligosaccharide-responsive genes in suspension-cultured rice cells

Project description:Chitin is a major component of fungal cell walls and serves as a molecular pattern for the recognition of potential pathogens in the innate immune systems of both plants and animals. In plants, chitin oligosaccharides have been known to induce various defense responses in a wide range of plant cells including both monocots and dicots. We identified chitine oligosaccharide-responsive genes in suspension-cultured rice cells 1-12 h after treatment using rice 44k microarray. Expression profiling in rice cells treated with chitin oligosaccharide for 1, 2, 4, 6, 8 and 12 h was compared with that in untreated control using two-color method with two biological replicates.

2012-07-24 | E-GEOD-39633 | biostudies-arrayexpress

Effect of overexpression of OsTGAP1 in chitin oligosaccharide elicitor-treated rice cells

Project description:To see the effect of overexpression of the bZIP transcription factor OsTGAP1, we compared the gene expression profiles in wild type rice cells and OsTGAP1-overexpressing rice cells. Expression profiling in the wild type rice cells and OsTGAP1-overexpressing rice cells treated with chitin oligosaccharide for 0, 6, and 24 h was compared using two-color method with four biological replicates.

2014-04-01 | E-GEOD-53417 | biostudies-arrayexpress

Chitin oligosaccharide-responsive genes in suspension-cultured rice cells

2012-07-25 | GSE39633 | GEO

Chitin Oligomer Experiment

Project description:Using the ATH1 Affymetrix microarrays consisting of about 23,000 genes, we examined the response of Arabidopsis seedlings to chito-tetramers, chito-octamers and hydrolyzed chitin after 30 min of treatment. Keywords = chitin Keywords = defense Keywords = elicitor Keywords = mutant Keywords = powdery mildew Keywords = Erysiphe cichoracearum Keywords: ordered

2005-06-01 | GSE2538 | GEO

Bacterial lipopolysaccharides induce defense responses associated with Programmed cell death in rice cell

Project description:PAMP (Pathogen-Associated Molecular Pattern) recognition plays an important role in innate immune responses both in plants and animals. Lipopolysaccharides (LPS) of gram-negative bacteria are a typical PAMP molecule and have been reported to induce defense-related responses such as suppression of hypersensitive responses, defense gene espression and systemic resistance in plant. However the detailed analysis of these cellular responses and the molecular machinery involved in the perception and transduction of LPS molecule largely remains to be studied. Furthermore, the biological activities of LPS on plants have so far been reported only for dicots and no information is available on the action of LPS on monocots. We report here that bacterial LPSs, both from plant pathogens and non-pathogens, could induce various defense responses in rice cells, including reactive oxygen generation and defense gene expression. Global analysis of gene expression induced by two PAMP elicitors, LPS and chitin oligosaccharide elicitor, showed a close correlation between the gene responses induced by these elicitors, indicating the convergence of signaling cascades downstream of corresponding receptors. Further, we show that the defense responses induced by LPS are associated with programmed cell death, a finding so far not reported for LPS action on plant cells. Keywords: elicitor, defense, LPS, rice cell

2006-09-28 | GSE5906 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data