Transcriptomics

Dataset Information

0

Analysis of the Infrared-A radiation induced transcriptom of human skin fibroblasts.


ABSTRACT: Background: Infrared A radiation (IRA 760-1440 nm) is a major component of solar radiation and, similar to ultraviolet (UV) radiation, causes photoaging of human skin by increasing the expression of matrixmetalloproteinase-1 (MMP-1) expression in human skin fibroblasts. This gene-regulatory effect resulted from the IRA induced activation of the pleiotropic MAPKinase ERK1/2 signaling pathway, indicating that the IRA response extends beyond MMP-1. In the present study we have therefore assessed the IRA-induced transcriptom in primary human skin fibroblasts. Results: Microarray analysis revealed 599 transcripts to be regulated by physiologically relevant doses of IRA in primary human skin fibroblasts. The IRA induced transcriptom differed from changes known to be induced by UVB or UVA radiation in the same cell type. IRA responsive genes include four categories: extracellular matrix, calcium homeostasis, stress signaling, and apoptosis. These results were confirmed by realtime PCR experiments analyzing thirteen of these genes representing these four categories. By means of chemical inhibitors of known signaling pathways we next show that besides ERK1/2, the p38-, JNK-, PI3K/AKT-, STAT3-, and IL-6 as well as calcium mediated signaling pathways are functionally involved in the IRA gene response and that a major part of it is triggered by mitochondrial, and to a lesser extent non-mitochondrial production of reactive oxygen species. Conclusion: This study identifies IRA radiation as a potent modulator of gene expression in human skin cells. The IRA response is specific and involves genes which are of critical importance for the homeostasis of human skin. Our data confirm the previous notion that IRA contributes to premature skin aging and indicate that further biological effects may result from IRA exposure of human skin.

ORGANISM(S): Homo sapiens

PROVIDER: GSE17046 | GEO | 2010/07/10

SECONDARY ACCESSION(S): PRJNA117853

REPOSITORIES: GEO

Similar Datasets

2010-07-10 | E-GEOD-17046 | biostudies-arrayexpress
| PRJNA117853 | ENA
2014-08-27 | E-GEOD-60795 | biostudies-arrayexpress
2014-08-27 | E-GEOD-60794 | biostudies-arrayexpress
2014-08-27 | GSE60794 | GEO
2014-08-27 | GSE60795 | GEO
| PRJNA616270 | ENA
2018-03-07 | GSE111444 | GEO
2009-05-31 | GSE14466 | GEO
2010-07-20 | E-GEOD-10547 | biostudies-arrayexpress