Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RBMS1 regulates lung cancer progression

ABSTRACT: In order to profile the translation events that were regulated by RBMS1, Ribo-seq was performed on A549 cells which was used to generate RBMS1 stably depleted and overexpressed lung cancer cells.

ORGANISM(S): Homo sapiens

PROVIDER: GSE171640 | GEO | 2021/11/24

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

FBXO32 drives pancreatic cancer progression

Project description:In order to profile the translation events that were regulated by FBXO32, Ribo-seq was performed on PANC-1 cells which was used to generate FBXO32 stably depleted pancreatic cancer cells.

2024-05-06 | GSE260802 | GEO

RBMS1 regulates breast cancer progression

Project description:In order to profile the transcription events that were regulated by RBMS1, mRNA-seq was performed on plko_ctl and plko_s1 which based on MDA-MB-231 cells

2022-08-31 | GSE183228 | GEO

RNA stability measurements in RBMS1 knockdown cells and control cells

Project description:In order to identify RBMS1-dependent changes in RNA stability, RBMS1 levels in SW480 breast cancer cells were stably knocked-down using short-hairpin RNAs. The cells were then treated with alpha-amanitin to inhibit transcription, RNA was isolated at 0 and 9 hours post-alpha-amanitin treatment, and the samples were transcriptomically profiled.

2020-09-16 | GSE147743 | GEO

RBMS1 regulates lung cancer progression

Project description:RBMS1 regulates lung cancer progression

| PRJNA720396 | ENA

Total RNA sequencing of RBMS1 knockdown cells

Project description:We compared gene expression in RBMS1 knockdown and control cells in the SW480 background.

2020-09-16 | GSE147741 | GEO

Transcriptomic and proteomic analysis reveals the potential role of RBMS1 in adipogenesis and adipocyte metabolism

Project description:Knockdown of RBMS1 in pre-adipocytes impacted the differentiation process and reduced the expression of some of the key adipogenic markers. Transcriptomic and proteomic analysis indicated that RBMS1 depletion affected the expression of several genes involved in major metabolic processes, including carbohydrate and lipid metabolism.

2023-06-30 | GSE233256 | GEO

Analysis of protein expression change upon RBMS1 knockdown

Project description:To assess how dpeletion of RBMS1 affects the proteome, SW480 colon adenocarcinoma cells expressing control or RBMS1 shRNAs were compared by Tandem Mass Tagging (TMT) protoemics.

2020-06-10 | PXD019478 | Pride

Interactome analysis of human RBMS1 protein in SW480 cells.

Project description:To identify protein binding partners of endogenous RBMS1, it was immunoprecipicated in triplicate, vs. IgG control, from SW480 colon adenocarcinoma cells, and subjected to MS analysis on an Q-exactive plus Orbitrap mass spectrometer. Raw files 13, 14, and 15 correspond to biological replicate IPs of RBMS1, and Raw files 16, 17, and 18 correspond to biological replicate IPs of IgG control.

2020-06-10 | PXD019479 | Pride

RIBO-seq analysis of YTHDF2-deficient pre-leukemic cells and control pre-leukemic cells

Project description:YTHDF2 is overexpressed in a broad spectrum of human acute myeloid leukemias (AML). To study the role of YTHDF2 on translation regulation in leukemia, c-Kit+ cells from foetal livers of Ythdf2fl/fl; Vav-iCre (Ythdf2CKO) and Ythdf2fl/fl (Ythdf2CTL) 14.5 dpc embryos were transduced with Meis1 and Hoxa9 oncogenes and serially re-plated to generate pre-leukemic cells. RIBO-seq libraries were then prepared from Ythdf2CKO (n=3) and Ythdf2CTL (n=3) pre-leukemic cells.

2019-04-05 | E-MTAB-7785 | biostudies-arrayexpress

Total RNA sequencing of RBMS1 knockdown cells

Project description:Total RNA sequencing of RBMS1 knockdown cells

| PRJNA616287 | ENA