Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

M. smegmatis response to energy- and oxygen-limitation in continuous culture

ABSTRACT: Transcriptional profiling of M. smegmatis grown at 69h doubling time compared to 4.6h doubling time both at 50% air saturation. Transcriptional profiling of M. smegmatis grown at 69h doubling time with 50%, 2.5% and 0.6% air saturation.

ORGANISM(S): Mycolicibacterium smegmatis MC2 155 Mycolicibacterium smegmatis

PROVIDER: GSE17520 | GEO | 2010/08/05

SECONDARY ACCESSION(S): PRJNA118797

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

M. smegmatis response to energy- and oxygen-limitation in continuous culture

Project description:Transcriptional profiling of M. smegmatis grown at 69h doubling time compared to 4.6h doubling time both at 50% air saturation. Transcriptional profiling of M. smegmatis grown at 69h doubling time with 50%, 2.5% and 0.6% air saturation. Two-condition experiment. Biological replicates: 5 independently grown and harvested. One replicate per array.

2010-08-05 | E-GEOD-17520 | biostudies-arrayexpress

Cholesterol chemostat M. smegmatis

Project description:M. smegmatis grown on cholesterol or glycerol in continous culture at a dilution rate of 0.01 h-1.

2016-01-01 | GSE71818 | GEO

M. smegmatis pruR::Tn611 mutant (MB100pruR)

Project description:Transcriptional profiling of M. smegmatis MB100pruR vs. MB100 (isogenic parent) grown in serumvials on Hartmans de Bont medium supplemented with glycerol and proline

2012-05-01 | GSE20362 | GEO

M. smegmatis response to deletion of Crp1 and overexpression of Crp2

Project description:Transcriptional profiling of M. smegmatis and Dcrp1 grown in flasks on Hartmans de Bont medium supplemented with 10 mM glycerol. Transcriptional profiling of M.smegmatis HLA102 harboring tetracycline inducible vector pMind containing the Crp2 and M. smegmatis harboring pMind grown in flasks on Hartmans de Bont medium supplemented with 10 mM glycerol

2014-10-31 | GSE56057 | GEO

Comparison of Transcription Profiles of M. smegmatis overexpressing wild type and phopshorylation defective PknK

Project description:We have shown that elevated levels of wild-type M. tuberculosis PknK (PknK Mtb), but not phosphorylation-defective PknKMtb, in Mycobacterium smegmatis cause significant retardation of growth rate and altered colony morphology (Malhotra et al., 2012). LIX79 (WT PknK) and LIX80 (PknK K55M mutant) M. smegmatis strains will be grown in LB and induced with 0.2% acetamide for the induction of wild type or phosphorylation defective pknK gene. RNA and Protein will be isolated from cultures pelleted at times—24 h (24h) and 96 h (96 h) post induction. M. smegmatis strain LIX70 containing the empty vector will be induced at the same time-points and used as a control in hybridization. Two independent replicate experiments will be done.

2022-03-10 | GSE180348 | GEO

Bedaquiline-induced transcriptional response of Mycobacterium smegmatis mc2 155

Project description:Transcriptional profiling of M. smegmatis mc2155 grown on Hartmans de Bont (HdB) supplemented with 0.2% glycerol and 0.05% Tween80 challenged with 2 μg/ml Bedaquiline and Dimethyl sulfoxide (DMSO)

2015-04-06 | GSE59871 | GEO

RNA-seq of Mycobacteriophage Island3 infection of Mycolicibacterium smegmatis mc2155, Mycolicibacterium smegmatis mc2155(Butters), and Mycolicibacterium smegmatis mc2155(Buttersgp57r)

Project description:RNA-seq of Mycobacteriophage Island3 infection of Mycolicibacterium smegmatis mc2155, Mycolicibacterium smegmatis mc2155(Butters), and Mycolicibacterium smegmatis mc2155(Buttersgp57r) to assess the impact of Butters lysogen and specifically Buttersgp57r on transcript levels of island3 during infection.

2022-12-24 | GSE221406 | GEO

Gene expression analysis of sensor kinase MSMEG_1918 (PdtaS) knockout compared to Wildtype M. smegmatis

Project description:Microarray analyses were performed on Wildtype Mycobacterium smegmatis and MSMEG_1918 gene knockout (ΔpdtaS) grown in two different carbon sources, glucose and glycerol.

2018-12-30 | GSE108559 | GEO

The AmtR regulon of Mycobacterium smegmatis - Transcription profile of an M. smegmatis amtR mutant (JR258) compared to M. smegmatis mc2155 (wild-type)

Project description:To identify the AmtR regulon of Mycobacterium smegmatis, we created a markerless deletion of the amtR gene in the background of strain M. smegmatis mc2155 (wild-type) and compared the transcription profile of both strains grown in batch culture under aerobic conditions on Hartmans de Bont medium supplemented with glycerol (carbon source) and lysine (sole nitrogen source) using microarray. Cells were harvested in early exponential growth stage.

2016-08-31 | E-MTAB-4857 | biostudies-arrayexpress

Cholesterol chemostat M. smegmatis

Project description:M. smegmatis grown on cholesterol or glycerol in continous culture at a dilution rate of 0.01 h-1. Two-condition experiment, cholesterol chemostat vs. glycerol chemostat. Biological replicates: 4, two dye swaps

2016-07-03 | E-GEOD-71818 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data