Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos

ABSTRACT: We examined the role of Taf15 in in gastrula and neurula stage Xenopus tropicalis embryos.

ORGANISM(S): Xenopus tropicalis

PROVIDER: GSE180671 | GEO | 2021/07/24

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos

Project description:Whole embryo depletion of Taf15 in gastrula and neurula stage Xenopus tropicalis embryos

| PRJNA749055 | ENA

Deep sequencing of small RNAs in the Xenopus tropicalis gastrula

Project description:Transposable elements comprise a large proportion of animal genomes. Transcripts of transposable elements are a source for the synthesis of endogenous siRNAs and piRNAs. In order to determine if small RNAs mapped to expressed Tc1-like elements are present during early Xenopus tropicalis development, we used Illumina (Solexa) to sequence small RNAs from gastrula-stage embryos. We obtained about 17 million reads that mapped perfectly to the genome. Small RNAs mapped to selected transposable elements were characterized and the expression of selected small RNAs was experimentally verified during development. This is the first deep sequencing experiment for small RNAs in the Xenopus tropicalis gastrula. Analysis of small RNAs expressed in the Xenopus tropicalis gastrula.

2011-06-18 | E-GEOD-30067 | biostudies-arrayexpress

Deep sequencing of small RNAs in the Xenopus tropicalis gastrula

2011-06-18 | GSE30067 | GEO

The Xenopus animal cap transcriptome: building a mucociliary epithelium.

Project description:Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used ectodermal explants (Animal Caps), which differentiate autonomously into a ciliated epidermis, highly related to the one in human airways. Animal caps were harvested at the gastrula neurula and tailbud stage.

2018-09-25 | GSE111171 | GEO

Xenopus tropicalis

Project description:Deep sequencing of small RNAs in the Xenopus tropicalis gastrula

| PRJNA144001 | ENA

Analysis of miRNA abundance in early gastrula stage lin28 knockdown Xenopus embryos

Project description:The abundance of miRNAs in control Xenopus tropicalis embryos at early gastrula stage 10.5 was compared to that in sibling embryos in which the RNA binding proteins lin28a1, lin28a2 and lin28b have been knocked down by injection of translation blocking antisense morpholino oligos.

2015-10-30 | E-MTAB-3936 | biostudies-arrayexpress

Xenopus tropicalis

Project description:Comprehensive indentification and characterization of the binding sites in the Xenopus tropicalis gastrula.

| PRJDB1932 | ENA

Xenopus tropicalis

Project description:Comprehensive identification and characterization of the binding sites in the Xenopus tropicalis gastrula.

| PRJDB2633 | ENA

Xenopus tropicalis

Project description:Comprehensive identification and characterization of the binding sites in the Xenopus tropicalis gastrula.

| PRJDB1768 | ENA

Xenopus tropicalis

Project description:Comprehensive identification and characterization of the binding sites in the Xenopus tropicalis gastrula.