Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide strand-specific R-loops mapping in E. coli DY330 using DRIP-Seq

ABSTRACT: Distribution of R-loops on genomic sites was studied for exponentially growing Escherichia coli in different conditions using strand-specific DRIP-Seq with S9.6 antibodies.

ORGANISM(S): Escherichia coli

PROVIDER: GSE181945 | GEO | 2022/01/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Genome-wide strand-specific R-loops mapping in E. coli DY330 using DRIP-Seq

Project description:Genome-wide strand-specific R-loops mapping in E. coli DY330 using DRIP-Seq

| PRJNA754022 | ENA

ChIP-Seq of RNAP in E. coli DY330

Project description:Distribution of RNAP beta' subunit (RpoC) on genomic sites was studied for exponentially growing Escherichia coli using ChIP-Seq.

2022-01-01 | GSE182850 | GEO

ChIP-Seq of topoisomerase I in E. coli DY330

Project description:Distribution of topoisomerase I (EcTopoI) on genomic sites was studied for exponentially growing Escherichia coli in different conditions using ChIP-Seq.

2022-01-01 | GSE181915 | GEO

Disruption of RNAPII transcription elongation links Oncogenic splicing factor mutations to replciation stress and targetable alterations in chromatin landscape [DRIP-seq]

Project description:To investigate the distribution of R-loop formation, we peformed R-loop mapping analysis using S9.6 antibody-based DRIP-seq in K562 cells (wild type and SF3B1K700E mutant) at 4 days after mutant allele expression We then performed metaplot and peak-based analysis using data obtained from DRIP-seq

2024-03-12 | GSE226001 | GEO

Escherichia coli strain:SR108

Project description:Exponentially Growing Escherichia coli

| PRJNA261257 | ENA

DRIP-seq reveals REXO4 and RNaseH1 work together to process R-loops in the same genomic region across the genome.

Project description:Endonuclease RNaseH1 acts as a common R-loop resolvase to prevent R-loop accumulation genome-widely, whether there is any exonuclease complementing RNaseH1 to more efficiently resolve R-loops is worth investigation. Here we identify an exonuclease REXO4, which collaborates with RNaseH1 to efficiently degrade R-loops in an “endo- and exo-cleavage coupling” manner.DNA-RNA immunoprecipitation followed by sequencing (DRIP-seq) shows that R-loop regions regulated by REXO4 highly overlap with those regulated by RNaseH1.

2026-01-08 | GSE253653 | GEO

Lipid overload-induced R Loops formed by m6A-modified circTACC3

Project description:To further elucidate the pathological characteristics of circTACC3-R loops in the HCC genome, circR loops were enriched by DRIP from lipid overload-induced HCC cells. Based on this premise, we devised an oligonucleotide probe specifically targeting the BSJ region of circTACC3, and used a ChIRP assay to selectively enrich the circR loops formed by endogenous circTACC3, named “DRIP-ChIRP”, by which specific enrichment of circTACC3 was detected within global circR loops and circTACC3-R loops

2025-12-04 | GSE272486 | GEO

CUT&Tag of R-loops in Ube2t knockdown P19 cells

Project description:DNA sequencing of libraries from CUT&Tag with R-loops antibody (S9.6) in Ube2t knockdown and control P19 cells

2025-08-01 | GSE212081 | GEO

RNA exonuclease REXO4 resolves m6A-marked R-loops and suppresses anti-tumor immunity [CUT&Tag-seq]

Project description:To map the genome-wide distribution of R-loops and REXO4, we performed CUT&Tag-seq with antibodies against S9.6 (for R-loops) and REXO4.

2026-05-28 | GSE313850 | GEO

CUT&Tag analysis of R-loops in Ube2t knockdown P19 cells (optimized)

Project description:DNA sequencing of libraries from CUT&Tag with R-loops antibody (S9.6) in Ube2t knockdown and control P19 cells

2024-05-30 | GSE223410 | GEO