Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next generation sequencing comparing RNA-seq data from Arabidopsis Col-0 wild type and splicing factor mutant prp8a-14

ABSTRACT: Purpose: Identify alternative splicing events and changes to transcript expression levels

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE182779 | GEO | 2022/07/05

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Next generation sequencing comparing RNA-seq data from Arabidopsis Col-0 wild type and splicing factor mutant prp8a-14

Project description:Next generation sequencing comparing RNA-seq data from Arabidopsis Col-0 wild type and splicing factor mutant prp8a-14

| PRJNA757754 | ENA

Next Generation Sequencing of Wild Type (Col-0) , LNJ overexpressor and jazD Transcriptomes in Arabidopsis thaliana

Project description:Plants were grown for 21 days under LD conditions and RNA was extracted and sequenced

2020-09-25 | GSE155487 | GEO

Next Generation Sequencing of Wild Type (Col-0) , fio1-1 and fio1-2 Transcriptomes in Arabidopsis thaliana

Project description:Plants were grown on 1/2 MS for 14 days under LD conditions and RNA was extracted and sequenced

2022-08-24 | GSE171926 | GEO

Arabidopsis thaliana strain:Col-0 | cultivar:Col-0 Mutant Line #14

Project description:Arabidopsis thaliana strain:Col-0 | cultivar:Col-0 Mutant Line #14 Genome sequencing

| PRJNA251286 | ENA

Expression profiling of Arabidopsis wild type Col-0 and pmr5 mutant

Project description:The rosettes from genotype Col-0 and pmr5 mutant were collected for RNA expression profiling when the plants were 3 weeks old.

2012-09-01 | GSE39708 | GEO

Alternative splicing in Col-0 and sc35-scl mutant in Arabidopsis tlianaha

Project description:Serine/arginine-rich (SR) proteins are important splicing factors which play significant roles in spliceosome assembly and splicing regulation. However, little is known regarding their biological functions in plants. Here, we analyzed the phenotypes of mutants upon depleting different subfamilies of Arabidopsis SR proteins. We found that loss of the functions of SC35 and SC35-like (SCL) proteins cause pleiotropic changes in plant morphology and development, including serrated leaves, late flowering, shorter roots and abnormal silique phyllotaxy. Using RNA-seq, we found that SC35 and SCL proteins play roles in the pre-mRNA splicing. Motif analysis revealed that SC35 and SCL proteins preferentially bind to a specific RNA sequence containing the AGAAGA motif. In addition, the transcriptions of a subset of genes are affected by the deletion of SC35 and SCL proteins which interact with NRPB4, a specific subunit of RNA polymerase II. The splicing of FLOWERING LOCUS C (FLC) intron1 and transcription of FLC were significantly regulated by SC35 and SCL proteins to control Arabidopsis flowering. Therefore, our findings provide mechanistic insight into the functions of plant SC35 and SCL proteins in the regulation of splicing and transcription to maintain the proper expression of genes and development.

2017-01-26 | GSE93910 | GEO

Expression data from Arabidopsis sid2.2 mutant (ICS1 mutant) and wild type (Col-0)

Project description:The sid2.2 mutant (Dewdney et al. 2000) with deletion/arrangement in exon 9 is deficient for salicylic acid synthesis. We used Affymetrix microarrays to detail the global programme of gene expression underlying metabolic and cellular changes in the rosettes of the Arabidopsis sid2.2 mutant and wild type grown under strong sulfate limitation.

2023-10-01 | GSE185514 | GEO

Arabidopsis gene expression profile : Col-0 wild-type vs. pif3pif4pil5pil6 (pifQ) mutant

Project description:Transcriptional profiling of 60h-old Arabidopsis whole seedlings comparing control Col-0 wild-type plants with pifQ mutant plants The expression profile of dark-grown pifQ mutant shows similar pattern of Rc-grown Col-0 wild-type Keywords: Genetic modification

2009-04-23 | GSE14492 | GEO

Arabidopsis dark-induced senescence: wild type (Col-0) vs. pif quadruple (pif1pif3pif4pif5) mutant

Project description:Transcriptional profiling of Arabidopsis dark-induced senescence comparing wild type (Col-0) with pif quadruple (pif1/3/4/5) mutant. After synchronized germination, the plants were grown under continuous white light for 7 days and transferred to darkness for 2 days to induce senescence. Goal was to determine the effect of PIFs on transcriptomic regulation during dark-induced senescence.

2014-08-04 | GSE52646 | GEO