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Time-course in rice leaves in the field: WT (cv.Norin8) vs. osgi mutant

ABSTRACT: Diurnal time-course transcriptional profiling of rice leaf in the field comparing a circadian clock related mutant, osgi, with the wild-type (WT).

ORGANISM(S): Oryza sativa

PROVIDER: GSE18685 | GEO | 2011/05/18

SECONDARY ACCESSION(S): PRJNA121565

REPOSITORIES: GEO

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Time-course in rice leaves in the field: WT (cv.Norin8) vs. osgi mutant

Project description:Diurnal time-course transcriptional profiling of rice leaf in the field comparing a circadian clock related mutant, osgi, with the wild-type (WT). Two sample experiments (WT vs. osgi) : 13 time-points (2h interval), 8 replicates (2leaves from individual plants x 4stages(each staggered by tranplanting dates with one week interval)): sampled on Aug. 12th 7:00-Aug.13th 7:00 (2008) at a paddy field in Tsukuba (Japan)

2011-05-18 | E-GEOD-18685 | biostudies-arrayexpress

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Project description:Time-course transcriptional profiling of rice leaf of the temperature shift experiment in a growth chamber. This experiment was performed to validate the results of field transcriptomic modeling. Rice leaves (cv. Norin8) were collected at 2:00 and 14:00 on the day -1, 2, 4 and 6 from the temperature shift (diurnal cycle temperature condition to continuous temperature condition). Two biological replicates for each sampling time point.

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Project description:A continuous gene expression profiling of roots was performed at regular interval during a 48-hr period in 2 different growth stages to characterize the diurnal and circadian gene expression profile of rice growth under natural field conditions.

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Rice leaves in the field in 2008 with 1- or 2-min interval

Project description:Time-course transcriptional profiling of rice leaf in the field in 2008. This experiment was performed to evaluate the resolution of two time points by inference from gene expressions.

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Diurnal variation for rice leaves in Furukawa field in 2014

Project description:We have previously demonstrated statistical modeling of gene expression under various environmental factors using field transcriptome data obtained from samples grown in a paddy field at Tsukuba, Japan. In this series of experiments, we would like to improve the models for practical use. In order to do that, we have done field transcriptome assay in seven paddy fields at different sites in Japan (or, Sappro, Furukawa, Toyama, Tsukuba, Takatsuki, Furukawa, and Fukuoka). This data is from one of the places, Furukawa. Time-course transcriptional profiling of rice leaf in Furukawa field in 2014. This experiment was performed to analyze the dynamics of field transcriptome data.

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Diurnal variation for rice leaves in Tsukuba field in 2014

Project description:We have previously demonstrated statistical modeling of gene expression under various environmental factors using field transcriptome data obtained from samples grown in a paddy field at Tsukuba, Japan. In this series of experiments, we would like to improve the models for practical use. In order to do that, we have done field transcriptome assay in seven paddy fields at different sites in Japan (or, Sappro, Furukawa, Toyama, Tsukuba, Takatsuki, Furukawa, and Fukuoka). This data is from one of the places, Tsukuba. Time-course transcriptional profiling of rice leaf in Tsukuba field in 2014. This experiment was performed to analyze the dynamics of field transcriptome data.

2017-03-31 | GSE65612 | GEO

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