Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

ABSTRACT: Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: Fifteen thousand cells subfractions within the HSC fraction were sorted. These cells were subjected to ATAC-seq using Hi-seq. The sequence reads that passed quality filters were analyzed by FASTX-toolkit.

ORGANISM(S): Mus musculus

PROVIDER: GSE187014 | GEO | 2022/01/19

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

single ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: One hundred thousand cells of subfractions within the HSC fraction were sorted. These cells were subjected to ATAC-sequence by using 10X Genomics Chromium Next GEM Single Cell ATAC Reagent Kits v1.1. The sequence reads that passed quality filters were analyzed by FASTX-toolkit.

2022-01-19 | GSE187444 | GEO

mRNA profiles of subfractions within hematopoietic stem cells in bone marrow

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: One hundred cells of subfractions within the HSC fraction were sorted. These cells were subjected to mRNA sequence using Next-seq. The sequence reads that passed quality filters were analyzed by CLC genomic workbench.

2022-01-19 | GSE187376 | GEO

mRNA profiles of hematopoietic stem and progenitor cells in bone marrow

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: Five thousand cells of subfractions within the HSC fraction were sorted. These cells were subjected to mRNA sequence using Next-seq. The sequence reads that passed quality filters were analyzed by CLC genomic workbench.

2022-01-19 | GSE186956 | GEO

ATAC-seq of hematopoietic stem cells in bone marrow after 5-FU administration

Project description:Purpose: The goals of this study are to elucidate the underlying mechanism for the regulation of HSC divisions. Methods: Before or after wild type (WT) mice were treated with 5-fluorouracil (5-FU), 15000 cells of HSCs were sorted. These cells were subjected to ATAC-seq using Next-seq. The sequence reads that passed quality filters were analyzed by FASTX-toolkit.

2022-01-19 | GSE164281 | GEO

Subfractions within hematopoietic stem cells in bone marrow

Project description:Subfractions within hematopoietic stem cells in bone marrow

| PRJNA777564 | ENA

Expression data from bone marrow CLP and B-cell progenitor subfractions.

Project description:Expression profiling of CLP subfractions (with different potential to develop into T-cells) and B-cell progenitors. Keywords: cell type comparison, B-cell progenitor, common lymphoid progenitor cells (CLP)

2008-06-29 | GSE11110 | GEO

mRNA profiles of subfractions within hematopoietic stem cells in bone marrow

Project description:mRNA profiles of subfractions within hematopoietic stem cells in bone marrow

| PRJNA777541 | ENA

ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

Project description:ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

| PRJNA777264 | ENA

single ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

Project description:single ATAC-seq of subfractions within hematopoietic stem cells in bone marrow

| PRJNA777569 | ENA

Proteomic dynamic changes in HDL subfractions from mouse plasma

Project description:HDL proteome dynamics may determine HDL cardioprotective functions. We aimed to characterize proteome and lipid profiles in small, medium and large (S/M/L) HDL fractions and analyze their functions. We characterized mouse HDL fractions by their high phospholipid (PL) content and collected S/M/L-HDLsubfractions by using fast protein liquid chromatography. The pooled S/L/M-HDL elution was subjected to mass spectrometry (MS) analysis using a Qstar XL-MS system, performing HDL subpopulation proteomic analysis. Fifty-one HDL proteins (39 in S-HDL, 27 in M-HDL and 29 in L-HDL) were identified and grouped into 4 functional categories (5 in lipid metabolism, 24 in immune response, 7 in coagulation, and 14 others). There were 16, 3 and 7 proteins present in only the S-HDL, M-HDL and L-HDL subfractions, respectively, and 11 proteins overlapped in all S/M/L-HDL subfractions. The dynamic changes in relative HDL protein levels were then characterized based on their functional groups by biological and bioinformatical methods.

2019-11-12 | PXD011185 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data