Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of Arabidopsis seedlings treated with chemical modifiers of sugar signalling at dawn

ABSTRACT: Arabidopsis seedlings were treated with DPI, pentamidine isethionate, tyrphostin AG879, AEG3482 or DMSO (control) at dawn (ZT0). Samples were collected for mRNA-seq for untreated seedlings at ZT0 or treated seedlings at ZT2.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE188596 | GEO | 2021/11/20

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

RNA-seq of Arabidopsis seedlings treated with chemical modifiers of sugar signalling at dawn

Project description:RNA-seq of Arabidopsis seedlings treated with chemical modifiers of sugar signalling at dawn

| PRJNA779531 | ENA

Transcription profiling of tomato plants at three time points in the light:dark cycle

Project description:We assayed the TOM2 microarray with target RNAs extracted from ZT0 (presumptive dawn), ZT8 (eight hours after dawn), ZT16 (presumptive dusk) and ZT20 (four hours after dusk), in Light/Dark (LD) conditions . The experimental design compared three time points to ZT0 used as a common reference: ZT8 vs. ZT0, ZT16 vs. ZT0 and ZT20 vs. ZT0. Sampling time is expressed as hours after dawn (Zeitgeber Time - ZT)

2009-04-02 | E-MEXP-1456 | biostudies-arrayexpress

The AtGenExpress: hormone inhibitor or other chemical treatment of seedlings in Arabidopsis

Project description:Arabidopsis seedlings of the wild-type were treated with inhibitors.

2012-07-17 | GSE39385 | GEO

IBMCP JLeon lab NO-exposed (15, 30 and 60 min after pulse of 300 ppm NO during 5 min) wt Col-0 versus untreated wt Col -0

Project description:Compared analysis of the transcriptomes of 12-day old seedlings from wild type Col-0 treated with NO for 15, 30 and 60 min vs untreated control seedlings. Samples were harvested 12 h after dawn of day 12 after sowing and seedlings were grown under long days (16 h light / 8 h darkness) photoperiodic conditions.

2015-12-01 | GSE75509 | GEO

Expression data from Arabidopsis pifq seedlings grown in short days (SD) and in free running (LL) conditions.

Project description:Members of the PIF quartet (PIFq) (PIF1, PIF3, PIF4, and PIF5) collectively contribute to induce growth in Arabidopsis seedlings under short day (SD) conditions, specifically promoting elongation at dawn. Their action involves the direct regulation of growth-related and hormone-associated genes. The objective of this genomic analysis was to define a comprehensive set of SD-regulated genes at dawn compared to free-running (LL) conditions in the wild type, followed by identification of those SD-regulated genes whose expression depends on the presence of PIFq. By using this sequential strategy, our aim was to identify PIF/SD-coregulated genes.

2016-08-31 | GSE81813 | GEO

Arabidopsis thaliana:goniothalamin-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with goniothalamin, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings.

2013-03-27 | GSE44749 | GEO

Arabidopsis thaliana:cyanamid-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with cyanamid, highlighting to the physiological function of phytochemicals by observing early response of gene expressions in Arabidopsis seedlings

2013-03-01 | GSE44750 | GEO

Arabidopsis thaliana: safranal-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with safranal, highlighting to the physiological function of plant volatile chemicals by observing early response of gene expressions in Arabidopsis seedlings.

2016-01-13 | GSE76787 | GEO

Arabidopsis thaliana: auxin-treated seedlings versus control seedlings

Project description:Transcriptional profiling of Arabidopsis thaliana seedlings treated with auxin (indole-3-acetic acid), highlighting to the physiological function of auxin by observing early response of gene expressions in Arabidopsis seedlings.

2012-05-10 | GSE37899 | GEO

Genome-wide profiling of diel and circadian gene expression of the malaria vector Anopheles gambiae

Project description:Anopheles gambiae, the primary African malarial mosquito, exhibits numerous behaviors that are under diel and circadian control, including locomotor activity, swarming, mating, host seeking, eclosion, egg laying and sugar feeding. However, little has been performed to elucidate the molecular basis for these daily rhythms. To study how gene expression is globally regulated by diel and circadian mechanisms, we have undertaken a DNA microarray analysis of A. gambiae head and bodies under 12:12 light:dark cycle (LD) and constant dark (DD, free-running) conditions. Zeitgeber Time (ZT) with ZT12 defined as time of lights OFF under the light:dark cycle, and ZT0 defined as end of the dawn transition. Circadian Time (CT) with CT0 defined as subjective dawn, inferred from ZT0 of the previous light:dark cycle.

2011-06-29 | GSE22585 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data