Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Influence of the downregulation of the MARS lncRNA (AT5G00580) of the response to Abscisic acid (ABA) in Arabidopsis

ABSTRACT: We analyze the effect of the downexpression of the lncRNA MARS (AT5G00580) on the transcriptome in response to ABA treatment. 12 DAS seedlings were harvested and total RNA extracted for RNA sequencing.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE192382 | GEO | 2022/02/24

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Influence of the downregulation of the ARES lncRNA (AT4G14548) on gene regulation in Arabidopsis thaliana

Project description:We analyze the effect of the downexpression of the ARES lncRNA (AT4G14548) on the transcriptome of Arabidopsis roots. 12 DAS roots were harvested and total RNA extracted for RNA sequencing.

2023-08-25 | GSE207358 | GEO

Influence of the downregulation of the MARS lncRNA (AT5G00580) of the response to Abscisic acid (ABA) in Arabidopsis

Project description:Influence of the downregulation of the MARS lncRNA (AT5G00580) of the response to Abscisic acid (ABA) in Arabidopsis

| PRJNA791315 | ENA

Transcriptome analysis of ROP10 GTPase-mediated abscisic acid (ABA) signaling in Arabidopsis

2005-11-14 | GSE3454 | GEO

Transcriptome analysis of ROP10 GTPase-mediated abscisic acid (ABA) signaling in Arabidopsis

Project description:In this study, we have identified genes that are respectively activated and repressed by the low concentration of ABA and show that ROP10 gates a specific subset of genes that are responsive only to a low ABA concentration. Keywords: Whole seedlings of wild-type (Ws) and the mutant (rop10-1) treated with or without ABA 12 Arabidopsis ATH1 chips were purchased from Affymetrix. Total RNA was extracted and purified from 1µM ABA-treated or non-treated Ws and rop10-1. Each genotype/treatment has three biological replicates. Probe labeling, array hybridization and scanning were done by the University of California-Irvine DNA Microarray Facility.

2005-11-14 | E-GEOD-3454 | biostudies-arrayexpress

Abscisic acid (ABA) application to Populus × canescens in hydroponics

Project description:4 weeks old rooted plantlets of P. × canescens (Clone INRA717 1-B4) were cultivated in hydroponics in 2 l pots in Long Ashton nutrient solution in a culture room for 8 weeks before treatments started. Three treatments were applied to the plants: control treatment (-ABA), continuous 100 µM ABA treatment (+ABA) and discontinuous 100 µM ABA treatment (±ABA). ABA was fed to +ABA plants during the whole treatment period of 30 days. ABA was fed to ±ABA plants for three days in two weeks. Developing xylem and mature xylem were collected separately during the harvest and shortly frozen in liquid nitrogen. RNA was extracted from these samples and followed by RNA-sequencing.

2019-01-20 | E-MTAB-7587 | biostudies-arrayexpress

Shoot and root of barley seeds: Abscisic acid (ABA) treatment

Project description:Transcriptional profiling of barley shoot and root with ABA

2014-04-01 | GSE41511 | GEO

Effect of dietary abscisic acid (ABA) supplementation on spleen transcriptome in LPS-challenged mice

Project description:BACKGROUND: Dietary ABA-supplementation modulates immune and inflammatory responses in mouse models of chronic and infectious disease. However, the underlying mechanisms by which ABA elicits its immune modulatory effects are not well understood. This project used a systems approach in combination with functional and in vivo studies to investigate the target gene pathways modulated by ABA in the context of an inflammatory LPS challenge. RESULTS: Dietary ABA-supplementation regulates the expression of gene pathways associated with peroxisome proliferator-activated receptor gamma (PPAR g), cAMP signaling and lipid metabolism in PPAR g-expressing mice. However, the pattern of differentially expressed genes is significantly reduced in the spleens of tissue-specific PPAR g null mice fed ABA. These differences in gene expression coincided with enhanced PPAR g-reporter activity of macrophages treated with ABA and enhanced intracellular cAMP accumulation in ABA-treated splenocytes.

2010-09-01 | GSE21013 | GEO

CRK36 RNAi ABA treatment

Project description:Genome-wide expression studies by an Arabidopsis 3 Oligo Microarray (Agilent Technologies, Switzerland) were performed using wild-type and CRK36 RNAi transgenic plants growing on plate containing ABA. We collected young seedlings growing on the plate containing 0.5 ?M ABA for 10 days.

2013-08-28 | E-MEXP-3354 | biostudies-arrayexpress

Shoot and root of barley seeds: Abscisic acid (ABA) treatment

Project description:Transcriptional profiling of barley shoot and root with ABA Time course experiments

2014-04-01 | E-GEOD-41511 | biostudies-arrayexpress

Effect of dietary abscisic acid (ABA) supplementation on spleen transcriptome in LPS-challenged mice

2010-09-01 | E-GEOD-21013 | biostudies-arrayexpress