Long non-coding RNA sequencing (RiboZero) analysis of monocytes-differentiated macrophages

ABSTRACT: Analysis of lncRNA differential expression in monocytes-derived macrophages M1 and M2 at 18h, Day 3, Day 5 and Day 7. StringTie was used to perform expression level for mRNAs and lncRNAs by calculating FPKM (FPKM=[total_exon_fragments/mapped_reads(millions)×exon_length(kB)]). The differentially expressed mRNAs and lncRNAs were selected with log2 (fold change) >1 or log2 (fold change) <-1 and with parametric F-test comparing nested linear models (p value < 0.05) by R package Ballgown.

ORGANISM(S): Homo sapiens

PROVIDER: GSE192642 | GEO | 2024/12/24

REPOSITORIES: GEO