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E.coli DH5alpha cells: reuterin-treated vs. untreated control cells

ABSTRACT: Transcriptional profiling of E. coli DH5alpha cells comparing control untreated cells with cells exposed to sublethal concentrations of reuterin (3-hydroxypropionaldehyde).

ORGANISM(S): Escherichia coli Escherichia coli DH5[alpha]

PROVIDER: GSE19760 | GEO | 2010/01/07

SECONDARY ACCESSION(S): PRJNA121841

REPOSITORIES: GEO

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E.coli DH5alpha cells: reuterin-treated vs. untreated control cells

Project description:Transcriptional profiling of E. coli DH5alpha cells comparing control untreated cells with cells exposed to sublethal concentrations of reuterin (3-hydroxypropionaldehyde). Two-condition experiment, reuterin-treated vs. untreated control E. coli DH5alpha cells. 5 biological replicate sets of reuterin-treated vs. untreated cells which were independently grown and harvested. Each array is probed with 1 replicate set.

2010-05-16 | E-GEOD-19760 | biostudies-arrayexpress

E.coli BL21 vs HLT013

Project description:Transcriptional profiling of E. coli strain comparing control BL21 with recombineered HLT013. HLT013 strains was derived from BL21 and capable of producing thymidine.

2015-06-18 | GSE69963 | GEO

E. coli cells: Control vs. P. aeruginosa spent-media treated

Project description:Transcriptional profiling of E. coli cells comparing control untreated cells with cells treated with P. aeruginosa spent media. The goal was to identify the effects of P. aeruginosa spent media on E. coli cells.

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S. coelicolor, control (untreated) vs ciprofloxacin-treated

Project description:Transcriptional profiling of S. coelicolor cells treated with sub-inhibitory or inhibitory concentrations of ciprofloxacin in comparision to untreated control when cultured in R5 media. Two-condition experiment, Control Vs CIP treatment.

2019-06-01 | GSE115753 | GEO

E. coli cells: Control vs. iron-supplemented P. aeruginosa spent-media treated

Project description:Transcriptional profiling of E. coli cells comparing control untreated cells with cells treated with iron-supplemented P. aeruginosa spent media. The goal was to identify the effects of P. aeruginosa spent media on E. coli cells, while neutralizing any effects of the P. aeruginosa siderophores

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S. coelicolor, Control (untreated) Vs Ciprofloxacin treated

Project description:Transcriptional profiling of S. coelicolor comparing control untreated cells with ciprofloxacin treated cells. Two-condition experiment, Control Vs CIP treatment. Biological replicates: 3 control, One dye swap replicate.

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Human SW480 cells: Untreated vs H2O2 Treated

2011-12-01 | GSE32382 | GEO

Human Chronic Lymphocytic Leukaemia cells: Untreated vs mithramycin-treated

Project description:Transcriptional profiling of primary human malignant B cells from patients with chronic lymphocytic leukaemia (CLL), comparing untreated CLL cells with CLL cells that have been treated 24h with 200nM mithramycin. Mithramycin intercalates into GC-rich regions of DNA to inhibit binding of the transcription factor SP1. The goal of this experiment is to gain understanding of the genes regulated by SP1 in primary CLL cells.

2022-12-14 | GSE210348 | GEO

Pseudomonas putida KT2440 : Control vs. recG gene mutant with untreated or paraquat (PQ) treated

Project description:Transcriptional profiling of P. putida KT2440 cells comparing control untreated wild type cells with untreated recG gene mutant cells or PQ treated recG gene mutant cells

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Human SW480 cells: Untreated vs H2O2 Treated

Project description:ChIP-on-chip tilling array comparing untreated human SW480 cells vs SW480 cells treated with 2mM H2O2 for 30min. Exposing cells to the reactive oxygen species, hydrogen peroxide, recruits DNA methyltransferase 1 (DNMT1) to damaged chromatin. DNMT1 becomes part of a complex(es) containing DNMT3B and members of Polycomb Repressive Complex 4. The goal was to determine the effect of hydrogen peroxide treatment on chromatin, including changes in histone modifications and binding patterns of chromatin-associated proteins. [Agilent-014706]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Five-mark: SIRT1, gamma-HA2X, DNMT1, DNMT3B, and EZH2. [Agilent-014707]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Five-mark: SIRT1, gamma-HA2X, DNMT1, DNMT3B, and EZH2. [Agilent-026595]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Five-mark: SIRT1, gamma-HA2X, DNMT1, DNMT3B, and H3. [Agilent-027811]: Two-condition: untreated SW480 cells (U) vs H2O2 treated SW480 cells (T). Four-mark: H3, 3MeK4H3, AcK16H4, and 3MeK27H3.

2011-12-01 | E-GEOD-32382 | biostudies-arrayexpress

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