Transcriptomics

Dataset Information

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CAPN3 depletion causes continuously activated innate immune response in zebrafish


ABSTRACT: Capn3 is responsible for human disease LGMD2B, but the mechanism is largely unknown. We generated two capn3b-/- mutant zebrafish alleles and found that p53 is highly enriched in the hepatocyte nucleoli of capn3b knock-out fish. Although homozygous capn3b knock-out mutants are viable and fertile, they display shorter length and lateral curvature phenotype in adulthood, which is similar to the limb-girdle muscular dystrophy type 2A (LGMD2A) patients caused by capn3 mutation. Using RNA-seq analysis of adult liver, we identified differentially expressed genes in capn3b-/- mutants. Genes involved in innate immune response pathways were highly enriched in the mutants' livers. This study presents the connection between capn3 deficiency and immune defects and provides new insights into LGMD2B therapy.

ORGANISM(S): Danio rerio

PROVIDER: GSE198711 | GEO | 2024/03/07

REPOSITORIES: GEO

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