Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

ABSTRACT: THP-1 cells were infected with VSV for 6 hours or 24 hours, RiP-seq was did with SAFA antibody.

ORGANISM(S): Homo sapiens

PROVIDER: GSE199677 | GEO | 2022/03/31

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

Project description:RIP- seq identified the interacted RNAs of SAFA with or without VSV infection

| PRJNA821177 | ENA

SAFA in chromatin accessibility regulation

Project description:Wild-type or SAFA-/- THP-1 cells were infected with VSV for 6 hours or 24 hours, samples were collected and send for ATAC-seq.

2022-03-31 | GSE199827 | GEO

RNP- seq in wild-type and SAFA knockout or mutated cells

Project description:wild-type and safa-/- THP-1 cells, or Flag-SAFA and Flag-Del-RGG stable expressed SAFA-/- cells were infected with VSV for 24 hours, samples were collected and send for RNA-seq.

2022-03-31 | GSE199674 | GEO

H3K27Ac ChIP-seq in wild-type and SAFA-/- cells

Project description:wild-type or SAFA-/- THP-1 cells were infected with VSV for 8 hours or 24 hours, ChIP-seq was did with H3K27Ac antibody.

2022-03-31 | GSE199402 | GEO

SAFA RGG domain in chromatin accessibility regulation

Project description:Flag-SAFA or Flag-Del-RGG mutant stablely expressed THP-1 cells were infected with VSV for 6 hours, samples were collected and send for ATAC-seq.

2022-03-31 | GSE199672 | GEO

UV-RIP experiments of ZNFX1 in VSV infected A549 cells

Project description:UV-RIP-seq was used to identify VSV-RNA associated with endogenous ZNFX1 in VSV infected A459 cells.

2019-08-30 | GSE132977 | GEO

UV cross-linking RIP-seq of VSV-GFP-infected HEK293T cells overexpressed PTENα

Project description:To determine whether PTENα directly binds to viral RNA or host mRNA, we performed UV cross-linking RNA immunoprecipitation (RIP) sequencing of HEK293T cells transfected with vector encoding PTENα under VSV-GFP (green fluorescent protein-expressing vesicular stomatitis virus) infection

2024-02-19 | GSE218439 | GEO

UV-RIP experiments of ZNFX1 in VSV infected A549 cells

Project description:UV-RIP experiments of ZNFX1 in VSV infected A549 cells

| PRJNA549612 | ENA

Genome wide RNA-seq of wild-type Hela transfected with SAFA-ADAR1cd upon HSV-1 infection

Project description:Genome wide RNA-Seq screen was did to detect gene expression of HSV-1 and Hela . We constructed a HeLa cell line that stably expresses the plasmids of SAFA or SAFA-ADAR1 catalytic domain(SAFA-ADAR1cd) or SAFA-ADAR1 catalytic domain E488Q(SAFA-ADAR1cd E488Q) . The RNAs were harvested followed by RNA sequencing to identify the edited RNA.

2022-06-01 | GSE132165 | GEO

RIP-PEN-SHAPE-MaP for 15.5K-interacted RNAs

Project description:RNA secondary structure is crucial for RNA mentalism, including transcription, splicing, translation, RNA-binding protein interaction as well as turnover. The kink-turn (K-turn) structure motif is is an RNA three-dimensional (3D) structure that exists in all three primary phylogenetic domains and plays vital roles in RNA metabolism. In order to investigate the K-turn secondary structure in vivo, we combined SHAPE-Map and our RIP-PEN-seq to profile the RNA structure of 15.5K-interacted RNAs.

2023-04-10 | GSE220470 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data