Transcriptomics

Dataset Information

40

Phenotypic plasticity in the pea aphid Acyrthosiphon pisum: miRNA sequencing


ABSTRACT: Bioinformatic prediction, deep sequencing of microRNA and expression analysis during phenotypic plasticity in the pea aphid acyrthosiphon pisum We developed high throughput Solexa sequencing and bioinformatic analyses of the genome of the pea aphid Acyrthosiphon pisum in order to identify the first miRNAs from a hemipteran insect. By combining these methods we identified 155 miRNAs including 56 conserved and 99 new miRNAs. Moreover, we investigated the regulation of these miRNAs in different alternative morphs of the pea aphid by analysing the expression of miRNAs across the switch of reproduction mode. Overall design: deep sequencing of small RNAs from parthenogenetic Acyrthosiphon pisum

INSTRUMENT(S): Illumina Genome Analyzer (Acyrthosiphon pisum)

ORGANISM(S): Acyrthosiphon pisum  

SUBMITTER: Stephanie Jaubert  

PROVIDER: GSE20107 | GEO | 2010-03-01

SECONDARY ACCESSION(S): PRJNA129787

REPOSITORIES: GEO

Similar Datasets

2010-03-01 | E-GEOD-20107 | ArrayExpress
2010-03-01 | GSE20106 | GEO
2010-05-06 | E-GEOD-20106 | ArrayExpress
2014-06-04 | E-GEOD-56830 | ArrayExpress
2007-06-05 | GSE8008 | GEO
2005-12-31 | GSE3742 | GEO
| PRJNA129787 | ENA
| PRJNA129785 | ENA
| PRJNA79965 | ENA
| PRJNA244726 | ENA