Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA Sequencing of SKMEL2 NT and GRAMD1B KO cells

ABSTRACT: We performed RNA Sequencing of SKMEL2 human melanoma cells expressing a NT sgRNA or sgRNA against GRAMD1B to identify differentially expressed genes in the GRAMD1B KO cells.

ORGANISM(S): Homo sapiens

PROVIDER: GSE202717 | GEO | 2022/10/06

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

RNA sequencing of NT control cells, Traf3 KO, and Traf3/p100 double KO cells

Project description:RNA sequencing of NT control cells, Traf3 KO, and Traf3/p100 double KO cells

| PRJNA616333 | ENA

Next-generation sequencing of RNA samples from the mice heart of Control, ABHD5-KO and ABHD5-KO transduced with AAV9 expressing HDAC4-NT (AAV9-NT)

Project description:The purpose of this experiment is to investigate the consequences of ABHD5 deletion in the heart and to evaluate HDAC4-NT gene transfer using AAV9 in ABHD5-KO.

2019-08-10 | GSE135662 | GEO

Next-generation sequencing of RNA samples from the mice heart of Control, ABHD5-KO and ABHD5-KO transduced with AAV9 expressing HDAC4-NT (AAV9-NT)

Project description:Next-generation sequencing of RNA samples from the mice heart of Control, ABHD5-KO and ABHD5-KO transduced with AAV9 expressing HDAC4-NT (AAV9-NT)

| PRJNA559559 | ENA

Ablation of ER stress-linked kinase PERK in cancer cells elicits protective T cell immunity by paraptosis immunogenic cell death-induced Type-I IFN

Project description:C57BL6 wildtype mice were injected with B16F10 melanoma transduced with either untargeted sgRNA (Scramble) or PERK (EIF2AK3) knockout (KO) sgRNA. At day 17, tumors were harvested to isolate cKit+ (CD117) precursors via magnetic bead enrichment. These cKit expressing precursors were then sequenced.

2022-07-28 | GSE206783 | GEO

RNA sequencing of NT control cells, Traf3 KO, and Traf3/p100 double KO cells

Project description:Loss of Traf3 caused a dramatic induction of innate immune response genes. Antigen presentation, interferon response genes and genes responsible for foreign DNA and RNA recognition were strongly upregulated by deletion of Traf3, but KO of p100 in Traf3 KO samples reversed the activation of these pathways. We did not detect any stimulation by Traf3 KO of those signaling pathways classically involved in proliferation, including PI3K/AKT, JNK, TGF-beta, WNT and Hippo

2020-03-31 | GSE147767 | GEO

RNA-seq to compare gene expression profiles between Asf1a WT and Asf1a KO cells

Project description:KrasG12D/P53-/-(KP)-Cas9 single clone was transfected with ctrl vector, ctrl sgRNA-1, ctrl-sgRNA-2 or ctrl-sgRNA-3 and then selected by using 5ug/ml Blasticidin, to get the 4 ctrl lines; KP-Cas9 single clone was transfected with Asf1a sgRNA-1, sgRNA-2, sgRNA-3 and new sgRNA-1 and then selected by using 5ug/ml Blasticidin, and then picked up single clones with Asf1a KO. For each Asf1a sgRNA, we selected one clone for RNA seq, so totally we have 4 Asf1a KO clones for RNA seq.

2019-11-26 | GSE127205 | GEO

Beauveria bassiana strain:NT | isolate:NT_100 | breed:NT | cultivar:NT

Project description:Beauveria bassiana strain:NT | isolate:NT_100 | breed:NT | cultivar:NT Transcriptome or Gene expression

| PRJNA450461 | ENA

Beauveria bassiana strain:NT | isolate:NT_60 | breed:NT | cultivar:NT

Project description:Beauveria bassiana strain:NT | isolate:NT_60 | breed:NT | cultivar:NT Transcriptome or Gene expression

| PRJNA450468 | ENA

Beauveria bassiana strain:NT | isolate:sp | breed:NT | cultivar:NT

Project description:Beauveria bassiana strain:NT | isolate:sp | breed:NT | cultivar:NT Transcriptome or Gene expression

| PRJNA450457 | ENA

BAP1/ASXL complex modulation regulates Epithelial-Mesenchymal Transition during trophoblast differentiation and invasion

Project description:The experiment shows the transcriptional changes between mouse trophoblast stem cells transduced with non-targeting single-guide RNA (NT-sgRNA) or sgRNA against the promoter of the Bap1 gene (sgRNA1) at two different time points, 0 days (0d) -stem cell conditions- and after 3 days (3d) of differentiation

2021-06-22 | GSE158670 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data