Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mechanistic study of Lcr35 probiotic properties using C. elegans model

ABSTRACT: To investigate the anti-candidiasis mechanisms of action of Lcr35 strain, a prophylactic and a curative treatments have been implemented in the C. elegans experimental model

ORGANISM(S): Caenorhabditis elegans

PROVIDER: GSE202877 | GEO | 2022/05/19

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Mechanistic study of Lcr35 probiotic properties using C. elegans model

Project description:Mechanistic study of Lcr35 probiotic properties using C. elegans model

| PRJNA837582 | ENA

Gene expression study of Drechslerella stenobrocha predating Caenorhabditis elegans.

2014-01-28 | GSE54423 | GEO

Using single-worm RNA sequencing to study C. elegans responses to pathogen infection

Project description:We have developed a single-worm RNA-seq method to effectively profile gene expression in individual C. elegans and applied this method to study C. elegans responses to pathogen infection.

2022-09-21 | GSE197834 | GEO

Small RNA sequencing study of C elegans piRNA biogenesis factors

Project description:Identification of defects in piRNAs and piRNA precursors Sequencing of small RNAs (18-30nt). Sample treatments: Secondary siRNAs in C. elegans carry a 5' triphosphate and this has to be removed prior to cloning, hence the use of 5' polyphosphatase treatment to reveal this population. TAP (tobacco acid pyrophosphatase) is another enzyme that removes 5' triphosphate but it also removes 5' CAP structures- we used this to look for piRNA precursor sequences in C. elegans that have a 5' cap.

2014-04-01 | E-GEOD-49220 | biostudies-arrayexpress

2D-INADEQUATE NMR study of C. elegans metabolome

Project description:2D INADEQUATE NMR datasets were collected from the endo and exo metabolome of heat shocked and control C. elegans

2014-09-25 | ST000103 | MetabolomicsWorkbench

Gene expression study of Drechslerella stenobrocha predating Caenorhabditis elegans.

Project description:we studied the gene expression conditions while Drechslerella stenobrocha predates Caenorhabditis elegans. The perpose of this study is to find genes in Drechslerella stenobrocha participateing in predation. Examination of 3 transcriptomes in different predation periods to find their different gene expression style.

2014-01-28 | E-GEOD-54423 | biostudies-arrayexpress

Salvia elegans

Project description:Salvia elegans

| PRJNA807625 | ENA

Caenorhabditis elegans

Project description:Caenorhabditis elegans

| PRJNA265871 | ENA

Eudromia elegans

Project description:Eudromia elegans

| PRJNA839044 | ENA

Yilmaz2016 - Genome scale metabolic model - Caenorhabditis elegans (iCEL1273)

Project description:Yilmaz2016 - Genome scale metabolic model - Caenorhabditis elegans (iCEL1273) This model is described in the article: A Caenorhabditis elegans Genome-Scale Metabolic Network Model. Yilmaz LS, Walhout AJ. Cell Syst 2016 May; 2(5): 297-311 Abstract: Caenorhabditis elegans is a powerful model to study metabolism and how it relates to nutrition, gene expression, and life history traits. However, while numerous experimental techniques that enable perturbation of its diet and gene function are available, a high-quality metabolic network model has been lacking. Here, we reconstruct an initial version of the C. elegans metabolic network. This network model contains 1,273 genes, 623 enzymes, and 1,985 metabolic reactions and is referred to as iCEL1273. Using flux balance analysis, we show that iCEL1273 is capable of representing the conversion of bacterial biomass into C. elegans biomass during growth and enables the predictions of gene essentiality and other phenotypes. In addition, we demonstrate that gene expression data can be integrated with the model by comparing metabolic rewiring in dauer animals versus growing larvae. iCEL1273 is available at a dedicated website (wormflux.umassmed.edu) and will enable the unraveling of the mechanisms by which different macro- and micronutrients contribute to the animal's physiology. This model is hosted on BioModels Database and identified by: MODEL1604210000. To cite BioModels Database, please use: BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication for more information.

2016-11-03 | MODEL1604210000 | BioModels

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data