Igh repertoire analysis in primary pro-B cells from WT, NE1-/- , Site1.3 -/- mice (VDJ-seq)

ABSTRACT: Analysis of the antibody repertoire composition is now possible using VDJ-seq. We used this recently developed method for unbiased amplification from genomic DNA (gDNA) to directly compare the Igh repertoire of C57Bl/6 (WT), NE1-/- and Site1.3 -/- pro-B cells. We find that a group of contiguous proximal and intermediate VH genes are under-utilized in V->DJ rearrangement in the absence of NE1 revealing a NE1 zone of influence. We report the VH gene usage profile from WT, NE1-/- and Site1.3 -/- primary pro-B cells from the VDJ-seq data.

ORGANISM(S): Mus musculus Mus

PROVIDER: GSE203484 | GEO | 2022/12/22

REPOSITORIES: GEO