Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Diffuse Alveolar Damage Patterns Reflect the Immunological and Molecular Heterogeneity in Fatal COVID-19

ABSTRACT: To date, few studies analyzed the nature of the temporal and spatial cell arrangement during the complex immune/inflammatory/molecular and structural cell alterations that take place in the lungs in severe COVID-19. Such information is crucial to better envision the disease complexity. To this end, we have applied a platform for multiplex imaging complemented with assessment of SARS-CoV-2, bacterial/fungi identification and cytokine/transcriptomic profiling in 18 lungs of deceased patients from Sao Paulo.

ORGANISM(S): Homo sapiens

PROVIDER: GSE205099 | GEO | 2022/08/31

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

SP80-3280 growth and maturation field 2

Project description:A field experiment was conducted at the Agricultural Sciences Center of the Federal University of Sao Carlos in Araras (22'21'25'S and 47'23'3'W) in the state of Sao Paulo, Brazil. Trial plots of SP-3280 consisted of four rows of 10 m long and spaced 1.35m apart. The field experiment was initiated in October 2012 and extended up until November 2013, representing the conditions under which ?one-year? sugarcane crops are cultivated.

2019-09-20 | GSE124990 | GEO

SP80-3280 growth and maturation field 1

Project description:A field experiment was conducted at the Agricultural Sciences Center of the Federal University of Sao Carlos in Araras (22°21'25''S and 47°23'3''W) in the state of Sao Paulo, Brazil. Trial plots of SP-3280 consisted of four rows of 10 m long and spaced 1.35m apart. The field experiment was initiated in April 2012 and extended up until May 2013, representing the conditions under which one-year-and-a-half sugarcane crops are cultivated.

2021-12-29 | GSE125067 | GEO

Gene expression data from Brazilian SPAH study

Project description:This study is part of previous epidemiologic project, including a population-based survey (Sao Paulo Ageing & Health study (SPAH Study). The data from this study was collected between 2015 to 2016 and involved elderly women (ages ≥65 yeas) living in the Butanta district, Sao Paulo. The purpose of the study was identification of association between transcriptome and the osteo metabolism diseases phenotype, like osteoporosis, vertebral fracture and coronary calcification. Peripheral blood cells suffer alterations in the gene expression pattern in response to perturbations caused by calcium metabolism diseases. The purpose of this study is to identify possible molecular markers associated with osteoporosis, vertebral fractures and coronary calcification in elderly women from community from Brazilian SPAH study. Vertebral fractures were the most common clinical manifestation of osteoporosis and coronary calcifications were associated with high morbimortality.

2020-06-10 | GSE152073 | GEO

ZLK

Project description:Sao Paulo Zoo Lake Study

| PRJEB7422 | ENA

lake water metagenome

Project description:Lake at Sao Paulo Zoo Metagenome

| PRJNA369078 | ENA

Transcription profiling of lymph node from mice with collagen induced arthritis in response to the endothelin receptor antagonist Bosentan

Project description:DBA/1J mice (12 wk old; weighing 18-22 g) were housed in temperature-controlled rooms (22-25 C) in the animal facility of the School of Medicine of Ribeir o Preto, University of Sao Paulo, Sao Paulo, Brazil, and received water and food ad libitum. Male DBA/1J mice received 200 g of bovine type II collagen (CII) in CFA by intradermal injection (day 0). Collagen (200 ?g in PBS) was given again on day 21 by i.p. injection. Mice were monitored daily for signs of arthritis for which severity scores were derived as follows: 0=normal, 1=erythema, 2=erythema plus swelling, 3= extension/loss function and total score = sum of four limbs. Disease onset characterized by erythema and/or paw swelling was seen between days 25 and 35. For the therapeutic approach, DBA/1 mice were treated with Bosentan (100 mg kg-1) p.o. or vehicle once a day for a total of 11 days. The treatment began on day that CIA became clinically detectable. The DBA-1/J mice were sacrificed preferentially by CO2 inhalation, and the lymph nodes removed. To obtain sufficient mRNA for hybridization to the glass slides, total inguinal lymph nodes RNA was pooled from three mice at each time point (2 inguinal lymph nodes per mouse). Total RNA samples were prepared using Trizol® reagent according to the manufacturers instructions. Undegraded and DNA-, protein- and phenol-free RNA preparations were verified by classic agarose gel electrophoresis stained with ethidium bromide and ultraviolet spectrophotometry, respectively.

2009-10-20 | E-MEXP-2404 | biostudies-arrayexpress

Fatal enhanced respiratory syncytial virus disease in toddlers

Project description:This study perfromed RNAseq on two FFPE lung samples from deceased participants from the 1867 RSV vaccine trial and compared these data to age and race matched controls from LungMAP.

2021-10-22 | GSE183435 | GEO

Candidatus Liberibacter americanus str. Sao Paulo

Project description:Candidatus Liberibacter americanus str. Sao Paulo Genome sequencing

| PRJNA181147 | ENA

Effect of Pre- and Postnatal Exposure to urban PM2.5 on the Transcriptome of the Developing and Early-Life Mouse Lung

Project description:Over the last years, evidence has grown that exposure to air pollution, in addition to impairing lung function and health in individuals of all age, can be linked to negative effects in newborn when present during pregnancy. Data suggests that intrauterine exposure of fetuses (exposure of the mother to air pollution during pregnancy) in fact exerts a negative impact on lung development. However, the means by which exposure during pregnancy affects lung development, have not been studied in depth yet. In this study, we investigated alterations of the transcriptome of the developing lung in a mouse model of gestational and early-life postnatal exposure to urban PM2.5 (from Sao Paulo, Brazil).

2018-06-08 | GSE104656 | GEO

Proteomics of high density lipoprotein subfractions in type 1 diabetes mellitus and controls

Project description:Toyoshima MTK. Proteomics and functionality of high-density lipoprotein subfractions and subclinical cardiovascular disease in type 1 diabetes mellitus. Faculdade de Medicina, Universidade de Sao Paulo 2021.

2021-08-13 | MSV000087986 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data