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Spatio-temporal gene expression of various tissues/organs throughout entire growth in rice

ABSTRACT: An overview of the expression pattern of all rice genes under natural field conditions based on microarray analysis of different organs and tissues at various stages of growth and development from transplanting to harvesting.

ORGANISM(S): Oryza sativa Oryza sativa Japonica Group

PROVIDER: GSE21396 | GEO | 2011/01/13

SECONDARY ACCESSION(S): PRJNA129491

REPOSITORIES: GEO

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Spatio-temporal gene expression of various tissues/organs throughout entire growth in rice

Project description:An overview of the expression pattern of all rice genes under natural field conditions based on microarray analysis of different organs and tissues at various stages of growth and development from transplanting to harvesting. A total of 48 samples representing organs/tissues at various stages of growth and development with 3 replicates each except for one anther sample with 2 replicates. Vegetative organs such as leaf blade, leaf sheath, root and stem were sampled during the vegetative, reproductive and ripening stages. Young inflorescence, anther, pistil, lemma, palea, ovary, embryo, and endosperm were sampled at various stages of development.

2011-01-13 | E-GEOD-21396 | biostudies-arrayexpress

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Continuous gene expression profile of leaf at nighttime throughout the entire growth of rice in the field

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Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field

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Project description:A continuous gene expression profiling of leaves was performed during nighttime at regular interval from transplanting until harvesting to understand the changes of transcriptional program and physiological state throughout entire growth of the rice plant under natural field conditions. The uppermost fully-expanded leaf in the main stem corresponding to the 1st leaf until 83 days after transplanting (DAT) and the flag leaf from them on were sampled in two replicates at 12:00 midnight at 7- day intervals encompassing 17 different growth stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

2012-12-03 | E-GEOD-36042 | biostudies-arrayexpress

Continuous gene expression profile of root at daytime throughout the entire growth of rice in the field

Project description:A continuous gene expression profiling of roots was performed during daytime at regular interval from transplanting until harvesting to characterize the transcriptional and physiological changes in the root system of rice throughout the entire growth under natural field conditions. Roots were sampled at daytime (12:00) at 7-day intervals encompassing 14 different growth stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

2012-12-03 | E-GEOD-39424 | biostudies-arrayexpress

Continuous gene expression profile of root at nighttime throughout the entire growth of rice in the field

Project description:A continuous gene expression profiling of roots was performed during nighttime at regular interval from transplanting until harvesting to characterize the transcriptional and physiological changes in the root system of rice throughout the entire growth under natural field conditions. Roots were sampled at nighttime (24:00) at 7-day intervals encompassing 14 different growth stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

2012-12-03 | E-GEOD-39425 | biostudies-arrayexpress

Continuous gene expression profile of leaf throughout the entire growth in rice

Project description:A continuous gene expression profiling of leaves at regular interval from transplanting until harvesting was performed to understand the changes of transcriptional program and physiological state throughout entire growth of the rice plant.

2011-01-13 | GSE21397 | GEO

Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field

Project description:A continuous gene expression profiling of leaves was performed at regular interval during a 48-hr period in 9 different growth stages from transplanting until harvesting to characterize the diurnal and circadian gene expression profile of rice and to understand the transcriptional program and physiological state throughout entire the growth under natural field conditions. The uppermost fully expanded leaf in the main stem was collected at 2-hr intervals during a 48-hr period at 9 different growth stages encompassing the vegetative, reproductive and ripening stages. All samples were obtained from rice plants grown in the field during the 2008 cultivation season.

2012-12-03 | E-GEOD-36040 | biostudies-arrayexpress

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