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Next Generation Sequencing For Quantitative Analysis Of Hepatic Transcriptomes In Response To Squalene in Swine model

ABSTRACT: Purpose: The goal of this study was to determine squalene effect on hepatic transcriptome by comparing high-throughput data for tested group vs. control group in male Large White x Landrace Large swine animals Method: Study the Hepatic mRNA profile of swine animals in response to a steatotic diet supplied with 0.5% squalene over a month by Transcriptome sequencing using DNBseq platform. Sequence reads that passed quality filters were mapped onto reference genome, followed by SNP & INDEL variants calling and Gene expression detection. Results: Squalene intake did not significantly influence single nucleotide polymorphisms. When alternative splicing events were tested, squalene administration had significant influence on splicing events including alternative 5' splicing, alternative 3' splicing , retained intron, skipped exons and mutually exclusive exons. Splicing patterns led to variety of differentially splicing genes and a variety of different isoforms from one gene. Differentially expressed genes were 18,659 in the squalene group and 18,602 in control group.

ORGANISM(S): Sus scrofa

PROVIDER: GSE214732 | GEO | 2023/08/30

REPOSITORIES: GEO

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Hepatic transcriptomics of squalene in male Apoe-deficient mice on Western diet

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Effect of squalene on liver transcriptome of mice lacking apolipoprotein E

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Effect of squalene on liver transcriptome of mice lacking apolipoprotein E

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Next Generation Sequencing For Quantitative Analysis Of Hepatic Transcriptomes In Response To Erythrodiol

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Universal alternative splicing of noncoding exons

Project description:Universal alternative splicing of noncoding exons

| PRJNA389124 | ENA

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Genome-wide identification of cancer-specific alternative splicing in circRNA

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